Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AL512638.1-201ENST00000457493 794 ntBASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 AP005117.1-202ENST00000581724 1908 ntBASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AC093214.1-201ENST00000511688 1107 ntBASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AC005498.2-205ENST00000593218 784 ntBASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AL390955.2-201ENST00000603032 514 ntBASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AL355385.1-201ENST00000606123 409 ntBASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AL390754.1-201ENST00000619088 582 ntBASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AL033527.5-202ENST00000641632 1098 ntBASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NUP54Q7Z3B4 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.71□□□□□ -0.06
NUP54Q7Z3B4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.71□□□□□ -0.06
NUP54Q7Z3B4 AC134407.2-201ENST00000625089 1978 ntBASIC14.71□□□□□ -0.06
NUP54Q7Z3B4 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.71□□□□□ -0.06
NUP54Q7Z3B4 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
NUP54Q7Z3B4 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 AC008894.3-201ENST00000624324 3103 ntBASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms