Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.84■□□□□ 0.29
SOX4Q06945 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.84■□□□□ 0.29
SOX4Q06945 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SOX4Q06945 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
SOX4Q06945 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.29
SOX4Q06945 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
SOX4Q06945 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.83■□□□□ 0.29
SOX4Q06945 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SOX4Q06945 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.29
SOX4Q06945 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SOX4Q06945 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.83■□□□□ 0.28
SOX4Q06945 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SOX4Q06945 AL133267.1-201ENST00000398220 340 ntBASIC16.83■□□□□ 0.28
SOX4Q06945 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.83■□□□□ 0.28
SOX4Q06945 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.83■□□□□ 0.28
SOX4Q06945 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 AL513523.2-202ENST00000427283 2040 ntBASIC16.83■□□□□ 0.28
SOX4Q06945 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 GPR53P-205ENST00000457298 1084 ntBASIC16.83■□□□□ 0.28
SOX4Q06945 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 ACA64.2-201ENST00000459014 129 ntBASIC16.83■□□□□ 0.28
SOX4Q06945 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.83■□□□□ 0.28
SOX4Q06945 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.83■□□□□ 0.28
SOX4Q06945 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.83■□□□□ 0.28
SOX4Q06945 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SOX4Q06945 KRT17P8-201ENST00000540749 863 ntBASIC16.83■□□□□ 0.28
SOX4Q06945 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.83■□□□□ 0.28
SOX4Q06945 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
SOX4Q06945 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.83■□□□□ 0.28
SOX4Q06945 AC026691.1-201ENST00000602502 2017 ntBASIC16.83■□□□□ 0.28
SOX4Q06945 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.83■□□□□ 0.28
SOX4Q06945 OR6D1P-203ENST00000641209 4860 ntBASIC16.83■□□□□ 0.28
SOX4Q06945 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SOX4Q06945 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SOX4Q06945 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.82■□□□□ 0.28
SOX4Q06945 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.82■□□□□ 0.28
SOX4Q06945 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 AL139384.1-201ENST00000612143 3047 ntBASIC16.82■□□□□ 0.28
SOX4Q06945 DRD5P1-201ENST00000456605 1438 ntBASIC16.82■□□□□ 0.28
SOX4Q06945 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.82■□□□□ 0.28
SOX4Q06945 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SOX4Q06945 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 AL162726.2-201ENST00000438986 1017 ntBASIC16.82■□□□□ 0.28
SOX4Q06945 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.82■□□□□ 0.28
SOX4Q06945 IGHV3-71-201ENST00000523324 359 ntBASIC16.82■□□□□ 0.28
SOX4Q06945 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.82■□□□□ 0.28
SOX4Q06945 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.82■□□□□ 0.28
SOX4Q06945 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.82■□□□□ 0.28
SOX4Q06945 AC106886.1-201ENST00000568660 600 ntBASIC16.82■□□□□ 0.28
SOX4Q06945 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.82■□□□□ 0.28
SOX4Q06945 MIR5189-201ENST00000577370 114 ntBASIC16.82■□□□□ 0.28
SOX4Q06945 AL008721.1-201ENST00000609964 604 ntBASIC16.82■□□□□ 0.28
SOX4Q06945 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SOX4Q06945 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SOX4Q06945 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SOX4Q06945 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX4Q06945 DOC2GP-204ENST00000639052 2548 ntBASIC16.81■□□□□ 0.28
SOX4Q06945 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
SOX4Q06945 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX4Q06945 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
SOX4Q06945 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX4Q06945 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX4Q06945 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX4Q06945 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SOX4Q06945 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.81■□□□□ 0.28
SOX4Q06945 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SOX4Q06945 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.81■□□□□ 0.28
SOX4Q06945 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX4Q06945 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.81■□□□□ 0.28
SOX4Q06945 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
SOX4Q06945 C1QBPP1-201ENST00000400117 770 ntBASIC16.81■□□□□ 0.28
SOX4Q06945 ATP5G2P4-201ENST00000442175 420 ntBASIC16.81■□□□□ 0.28
SOX4Q06945 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.81■□□□□ 0.28
SOX4Q06945 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX4Q06945 CLUHP6-201ENST00000580789 941 ntBASIC16.81■□□□□ 0.28
SOX4Q06945 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.81■□□□□ 0.28
SOX4Q06945 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.81■□□□□ 0.28
SOX4Q06945 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SOX4Q06945 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms