Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 HLA-H-201ENST00000383620 1096 ntBASIC12.87□□□□□ -0.35
CX3CL1P78423 AL627223.1-201ENST00000416693 442 ntBASIC12.87□□□□□ -0.35
CX3CL1P78423 AC254562.1-201ENST00000417586 456 ntBASIC12.87□□□□□ -0.35
CX3CL1P78423 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC12.87□□□□□ -0.35
CX3CL1P78423 KRT18P32-201ENST00000424695 1287 ntBASIC12.87□□□□□ -0.35
CX3CL1P78423 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 AP006288.1-201ENST00000446065 395 ntBASIC12.87□□□□□ -0.35
CX3CL1P78423 AC245100.5-201ENST00000452108 331 ntBASIC12.87□□□□□ -0.35
CX3CL1P78423 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC12.87□□□□□ -0.35
CX3CL1P78423 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC12.87□□□□□ -0.35
CX3CL1P78423 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CX3CL1P78423 SNHG9-202ENST00000564014 471 ntBASIC12.87□□□□□ -0.35
CX3CL1P78423 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC12.87□□□□□ -0.35
CX3CL1P78423 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC12.87□□□□□ -0.35
CX3CL1P78423 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CX3CL1P78423 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC12.87□□□□□ -0.35
CX3CL1P78423 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.87□□□□□ -0.35
CX3CL1P78423 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
CX3CL1P78423 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC12.87□□□□□ -0.35
CX3CL1P78423 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC12.87□□□□□ -0.35
CX3CL1P78423 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC12.87□□□□□ -0.35
CX3CL1P78423 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC12.87□□□□□ -0.35
CX3CL1P78423 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.87□□□□□ -0.35
CX3CL1P78423 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
CX3CL1P78423 TK2-221ENST00000620035 5060 ntTSL 2 BASIC12.87□□□□□ -0.35
CX3CL1P78423 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CX3CL1P78423 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
CX3CL1P78423 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
CX3CL1P78423 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC12.86□□□□□ -0.35
CX3CL1P78423 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 HAUS4P1-201ENST00000406739 1145 ntBASIC12.86□□□□□ -0.35
CX3CL1P78423 FAM58DP-201ENST00000428076 619 ntBASIC12.86□□□□□ -0.35
CX3CL1P78423 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC12.86□□□□□ -0.35
CX3CL1P78423 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC12.86□□□□□ -0.35
CX3CL1P78423 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 AC093520.2-201ENST00000561830 333 ntBASIC12.86□□□□□ -0.35
CX3CL1P78423 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC12.86□□□□□ -0.35
CX3CL1P78423 AC061975.2-201ENST00000581722 295 ntBASIC12.86□□□□□ -0.35
CX3CL1P78423 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC12.86□□□□□ -0.35
CX3CL1P78423 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC12.86□□□□□ -0.35
CX3CL1P78423 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC12.86□□□□□ -0.35
CX3CL1P78423 AC079781.4-201ENST00000641908 219 ntBASIC12.86□□□□□ -0.35
CX3CL1P78423 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 AL603832.2-201ENST00000566195 2125 ntBASIC12.86□□□□□ -0.35
CX3CL1P78423 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC12.86□□□□□ -0.35
CX3CL1P78423 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 422.9 ms