Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.61■□□□□ 0.25
HDAC4P56524 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.61■□□□□ 0.25
HDAC4P56524 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.61■□□□□ 0.25
HDAC4P56524 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
HDAC4P56524 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.6■□□□□ 0.25
HDAC4P56524 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HDAC4P56524 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.6■□□□□ 0.25
HDAC4P56524 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 RPL37AP1-201ENST00000412502 279 ntBASIC16.6■□□□□ 0.25
HDAC4P56524 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
HDAC4P56524 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 KLF2P3-201ENST00000451977 1087 ntBASIC16.6■□□□□ 0.25
HDAC4P56524 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.6■□□□□ 0.25
HDAC4P56524 AC125807.1-201ENST00000483097 614 ntBASIC16.6■□□□□ 0.25
HDAC4P56524 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.6■□□□□ 0.25
HDAC4P56524 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.6■□□□□ 0.25
HDAC4P56524 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.6■□□□□ 0.25
HDAC4P56524 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.6■□□□□ 0.25
HDAC4P56524 AC097359.3-201ENST00000603982 1210 ntBASIC16.6■□□□□ 0.25
HDAC4P56524 SPDYE12P-201ENST00000618416 771 ntBASIC16.6■□□□□ 0.25
HDAC4P56524 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.6■□□□□ 0.25
HDAC4P56524 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 CETN4P-206ENST00000642099 2168 ntBASIC16.6■□□□□ 0.25
HDAC4P56524 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HDAC4P56524 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.6■□□□□ 0.25
HDAC4P56524 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.59■□□□□ 0.25
HDAC4P56524 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.59■□□□□ 0.25
HDAC4P56524 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.59■□□□□ 0.25
HDAC4P56524 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.59■□□□□ 0.25
HDAC4P56524 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HDAC4P56524 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HDAC4P56524 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.59■□□□□ 0.25
HDAC4P56524 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.59■□□□□ 0.25
HDAC4P56524 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.59■□□□□ 0.25
HDAC4P56524 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.59■□□□□ 0.25
HDAC4P56524 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.59■□□□□ 0.25
HDAC4P56524 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.59■□□□□ 0.25
HDAC4P56524 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.59■□□□□ 0.25
HDAC4P56524 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.59■□□□□ 0.25
HDAC4P56524 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 FLJ16779-201ENST00000612722 7638 ntBASIC16.59■□□□□ 0.25
HDAC4P56524 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.59■□□□□ 0.25
HDAC4P56524 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.59■□□□□ 0.25
HDAC4P56524 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.59■□□□□ 0.25
HDAC4P56524 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
HDAC4P56524 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
HDAC4P56524 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.59■□□□□ 0.25
HDAC4P56524 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HDAC4P56524 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
HDAC4P56524 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HDAC4P56524 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
HDAC4P56524 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HDAC4P56524 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.58■□□□□ 0.25
HDAC4P56524 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms