Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.79■□□□□ 0.28
LIG3P49916 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
LIG3P49916 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.79■□□□□ 0.28
LIG3P49916 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LIG3P49916 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
LIG3P49916 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.79■□□□□ 0.28
LIG3P49916 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.79■□□□□ 0.28
LIG3P49916 AP006288.1-201ENST00000446065 395 ntBASIC16.79■□□□□ 0.28
LIG3P49916 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.79■□□□□ 0.28
LIG3P49916 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.79■□□□□ 0.28
LIG3P49916 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.79■□□□□ 0.28
LIG3P49916 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.79■□□□□ 0.28
LIG3P49916 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 MIR4492-201ENST00000581627 80 ntBASIC16.79■□□□□ 0.28
LIG3P49916 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LIG3P49916 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
LIG3P49916 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.79■□□□□ 0.28
LIG3P49916 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LIG3P49916 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LIG3P49916 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC16.79■□□□□ 0.28
LIG3P49916 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LIG3P49916 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIG3P49916 TK2-221ENST00000620035 5060 ntTSL 2 BASIC16.78■□□□□ 0.28
LIG3P49916 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.78■□□□□ 0.28
LIG3P49916 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.78■□□□□ 0.28
LIG3P49916 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 AL645728.1-201ENST00000366221 2101 ntBASIC16.78■□□□□ 0.28
LIG3P49916 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.78■□□□□ 0.28
LIG3P49916 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.78■□□□□ 0.28
LIG3P49916 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.78■□□□□ 0.28
LIG3P49916 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
LIG3P49916 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
LIG3P49916 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
LIG3P49916 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.78■□□□□ 0.28
LIG3P49916 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.78■□□□□ 0.28
LIG3P49916 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
LIG3P49916 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.78■□□□□ 0.28
LIG3P49916 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.78■□□□□ 0.28
LIG3P49916 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.78■□□□□ 0.28
LIG3P49916 CYP2A7P1-201ENST00000595391 815 ntBASIC16.78■□□□□ 0.28
LIG3P49916 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
LIG3P49916 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LIG3P49916 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.78■□□□□ 0.28
LIG3P49916 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 AC006486.2-201ENST00000624246 2199 ntBASIC16.78■□□□□ 0.28
LIG3P49916 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.78■□□□□ 0.28
LIG3P49916 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LIG3P49916 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIG3P49916 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC16.78■□□□□ 0.28
LIG3P49916 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
LIG3P49916 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIG3P49916 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
LIG3P49916 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIG3P49916 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIG3P49916 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.77■□□□□ 0.28
LIG3P49916 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIG3P49916 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
LIG3P49916 LINC00528-201ENST00000600723 2160 ntBASIC16.77■□□□□ 0.28
LIG3P49916 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIG3P49916 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
LIG3P49916 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
LIG3P49916 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms