Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
HOXA1P49639 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXA1P49639 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXA1P49639 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 AL358472.4-201ENST00000633140 710 ntBASIC13.29□□□□□ -0.28
HOXA1P49639 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXA1P49639 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 CES1P1-201ENST00000421606 1704 ntBASIC13.29□□□□□ -0.28
HOXA1P49639 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXA1P49639 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXA1P49639 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 AC067750.1-201ENST00000608826 6545 ntBASIC13.29□□□□□ -0.28
HOXA1P49639 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 AC006504.5-208ENST00000588784 2401 ntBASIC13.29□□□□□ -0.28
HOXA1P49639 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HOXA1P49639 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 AC126335.2-201ENST00000623362 4637 ntBASIC13.28□□□□□ -0.28
HOXA1P49639 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXA1P49639 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC13.28□□□□□ -0.28
HOXA1P49639 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXA1P49639 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HOXA1P49639 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
HOXA1P49639 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXA1P49639 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.28□□□□□ -0.28
HOXA1P49639 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HOXA1P49639 SUPT20HL2-201ENST00000486479 2409 ntBASIC13.28□□□□□ -0.28
HOXA1P49639 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 EMD-201ENST00000369835 966 ntTSL 3 BASIC13.28□□□□□ -0.28
HOXA1P49639 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC13.28□□□□□ -0.28
HOXA1P49639 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC13.28□□□□□ -0.28
HOXA1P49639 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC13.28□□□□□ -0.28
HOXA1P49639 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXA1P49639 AC087641.1-201ENST00000557561 1021 ntBASIC13.28□□□□□ -0.28
HOXA1P49639 RNF151-202ENST00000569210 853 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXA1P49639 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 AC091076.1-201ENST00000610741 619 ntBASIC13.28□□□□□ -0.28
HOXA1P49639 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXA1P49639 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
HOXA1P49639 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 AL353732.1-201ENST00000569618 1459 ntBASIC13.28□□□□□ -0.28
HOXA1P49639 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXA1P49639 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXA1P49639 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXA1P49639 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HOXA1P49639 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXA1P49639 LINC00552-201ENST00000625151 2579 ntBASIC13.27□□□□□ -0.28
HOXA1P49639 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXA1P49639 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXA1P49639 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.27□□□□□ -0.28
HOXA1P49639 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC13.27□□□□□ -0.28
HOXA1P49639 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
HOXA1P49639 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HOXA1P49639 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXA1P49639 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXA1P49639 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXA1P49639 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXA1P49639 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC13.27□□□□□ -0.28
HOXA1P49639 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.27□□□□□ -0.28
HOXA1P49639 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.27□□□□□ -0.28
HOXA1P49639 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.27□□□□□ -0.28
HOXA1P49639 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXA1P49639 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXA1P49639 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
HOXA1P49639 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC13.27□□□□□ -0.29
HOXA1P49639 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms