Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC093214.1-201ENST00000511688 1107 ntBASIC15.01□□□□□ -0.01
SOX3P41225 IGHV3-42-201ENST00000520410 361 ntBASIC15.01□□□□□ -0.01
SOX3P41225 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
SOX3P41225 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.01□□□□□ -0.01
SOX3P41225 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.01□□□□□ -0.01
SOX3P41225 AC024267.1-201ENST00000582320 895 ntBASIC15.01□□□□□ -0.01
SOX3P41225 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SOX3P41225 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.01□□□□□ -0.01
SOX3P41225 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 AP005117.1-202ENST00000581724 1908 ntBASIC15.01□□□□□ -0.01
SOX3P41225 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 AC006449.6-201ENST00000612330 2296 ntBASIC15.01□□□□□ -0.01
SOX3P41225 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.01□□□□□ -0.01
SOX3P41225 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
SOX3P41225 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.01□□□□□ -0.01
SOX3P41225 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15□□□□□ -0.01
SOX3P41225 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15□□□□□ -0.01
SOX3P41225 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15□□□□□ -0.01
SOX3P41225 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 U82695.1-201ENST00000635752 1889 ntBASIC15□□□□□ -0.01
SOX3P41225 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
SOX3P41225 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15□□□□□ -0.01
SOX3P41225 AC055876.3-201ENST00000431496 288 ntBASIC15□□□□□ -0.01
SOX3P41225 POU5F1P6-201ENST00000466990 990 ntBASIC15□□□□□ -0.01
SOX3P41225 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15□□□□□ -0.01
SOX3P41225 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15□□□□□ -0.01
SOX3P41225 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15□□□□□ -0.01
SOX3P41225 AC011467.4-201ENST00000594891 528 ntBASIC15□□□□□ -0.01
SOX3P41225 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
SOX3P41225 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15□□□□□ -0.01
SOX3P41225 AC138649.4-201ENST00000612222 287 ntBASIC15□□□□□ -0.01
SOX3P41225 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
SOX3P41225 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15□□□□□ -0.01
SOX3P41225 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SOX3P41225 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15□□□□□ -0.01
SOX3P41225 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15□□□□□ -0.01
SOX3P41225 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SOX3P41225 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SOX3P41225 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
SOX3P41225 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC14.99□□□□□ -0.01
SOX3P41225 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.99□□□□□ -0.01
SOX3P41225 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
SOX3P41225 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.99□□□□□ -0.01
SOX3P41225 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.99□□□□□ -0.01
SOX3P41225 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.99□□□□□ -0.01
SOX3P41225 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.99□□□□□ -0.01
SOX3P41225 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.99□□□□□ -0.01
SOX3P41225 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.99□□□□□ -0.01
SOX3P41225 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.99□□□□□ -0.01
SOX3P41225 AC061975.2-201ENST00000581722 295 ntBASIC14.99□□□□□ -0.01
SOX3P41225 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.99□□□□□ -0.01
SOX3P41225 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.99□□□□□ -0.01
SOX3P41225 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 AL158211.3-201ENST00000607385 239 ntBASIC14.99□□□□□ -0.01
SOX3P41225 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.99□□□□□ -0.01
SOX3P41225 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.99□□□□□ -0.01
SOX3P41225 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms