Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH3P22223 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDH3P22223 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.66■□□□□ 0.1
CDH3P22223 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CDH3P22223 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CDH3P22223 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.65■□□□□ 0.1
CDH3P22223 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH3P22223 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH3P22223 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.65■□□□□ 0.1
CDH3P22223 FAM8A3P-201ENST00000427218 844 ntBASIC15.65■□□□□ 0.1
CDH3P22223 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.65■□□□□ 0.1
CDH3P22223 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.65■□□□□ 0.1
CDH3P22223 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.65■□□□□ 0.1
CDH3P22223 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CDH3P22223 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.65■□□□□ 0.1
CDH3P22223 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH3P22223 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.65■□□□□ 0.1
CDH3P22223 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH3P22223 RN7SL828P-201ENST00000607615 303 ntBASIC15.65■□□□□ 0.1
CDH3P22223 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.65■□□□□ 0.1
CDH3P22223 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH3P22223 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CDH3P22223 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
CDH3P22223 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CDH3P22223 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CDH3P22223 CETN4P-206ENST00000642099 2168 ntBASIC15.65■□□□□ 0.1
CDH3P22223 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CDH3P22223 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.65■□□□□ 0.1
CDH3P22223 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.64■□□□□ 0.1
CDH3P22223 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
CDH3P22223 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.64■□□□□ 0.09
CDH3P22223 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CDH3P22223 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CDH3P22223 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
CDH3P22223 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.64■□□□□ 0.09
CDH3P22223 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 AC092580.3-201ENST00000430932 139 ntBASIC15.64■□□□□ 0.09
CDH3P22223 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.64■□□□□ 0.09
CDH3P22223 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.64■□□□□ 0.09
CDH3P22223 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.64■□□□□ 0.09
CDH3P22223 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.64■□□□□ 0.09
CDH3P22223 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.64■□□□□ 0.09
CDH3P22223 AC061975.2-201ENST00000581722 295 ntBASIC15.64■□□□□ 0.09
CDH3P22223 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.64■□□□□ 0.09
CDH3P22223 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.64■□□□□ 0.09
CDH3P22223 AC026979.3-201ENST00000607315 403 ntBASIC15.64■□□□□ 0.09
CDH3P22223 AL365330.1-201ENST00000607459 531 ntBASIC15.64■□□□□ 0.09
CDH3P22223 AL589739.1-201ENST00000607720 493 ntBASIC15.64■□□□□ 0.09
CDH3P22223 SPDYE12P-201ENST00000618416 771 ntBASIC15.64■□□□□ 0.09
CDH3P22223 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.64■□□□□ 0.09
CDH3P22223 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.64■□□□□ 0.09
CDH3P22223 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CDH3P22223 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.64■□□□□ 0.09
CDH3P22223 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
CDH3P22223 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
CDH3P22223 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
CDH3P22223 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDH3P22223 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.63■□□□□ 0.09
CDH3P22223 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH3P22223 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH3P22223 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CDH3P22223 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.63■□□□□ 0.09
CDH3P22223 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH3P22223 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.63■□□□□ 0.09
CDH3P22223 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH3P22223 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH3P22223 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CDH3P22223 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.63■□□□□ 0.09
CDH3P22223 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDH3P22223 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms