Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.04■□□□□ 0.16
VIMP08670 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 KRT8P44-201ENST00000441609 1350 ntBASIC16.04■□□□□ 0.16
VIMP08670 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 AC041040.2-201ENST00000622926 2899 ntBASIC16.04■□□□□ 0.16
VIMP08670 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.04■□□□□ 0.16
VIMP08670 KRT18P57-201ENST00000443599 1254 ntBASIC16.04■□□□□ 0.16
VIMP08670 PRYP5-201ENST00000451909 266 ntBASIC16.04■□□□□ 0.16
VIMP08670 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.04■□□□□ 0.16
VIMP08670 BX005266.1-201ENST00000473402 457 ntBASIC16.04■□□□□ 0.16
VIMP08670 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.04■□□□□ 0.16
VIMP08670 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
VIMP08670 Z69720.1-201ENST00000601483 472 ntBASIC16.04■□□□□ 0.16
VIMP08670 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.04■□□□□ 0.16
VIMP08670 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.04■□□□□ 0.16
VIMP08670 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.04■□□□□ 0.16
VIMP08670 AF228730.7-201ENST00000641842 219 ntBASIC16.04■□□□□ 0.16
VIMP08670 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
VIMP08670 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
VIMP08670 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
VIMP08670 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.04■□□□□ 0.16
VIMP08670 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC16.04■□□□□ 0.16
VIMP08670 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
VIMP08670 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VIMP08670 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
VIMP08670 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
VIMP08670 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
VIMP08670 ADAMTS7P1-201ENST00000613213 4793 ntBASIC16.03■□□□□ 0.16
VIMP08670 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
VIMP08670 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.03■□□□□ 0.16
VIMP08670 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VIMP08670 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC16.03■□□□□ 0.16
VIMP08670 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
VIMP08670 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC16.03■□□□□ 0.16
VIMP08670 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VIMP08670 PI4KAP1-204ENST00000612579 1703 ntBASIC16.03■□□□□ 0.16
VIMP08670 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VIMP08670 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VIMP08670 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC16.03■□□□□ 0.16
VIMP08670 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.03■□□□□ 0.16
VIMP08670 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.03■□□□□ 0.16
VIMP08670 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.03■□□□□ 0.16
VIMP08670 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.03■□□□□ 0.16
VIMP08670 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.03■□□□□ 0.16
VIMP08670 AL671277.2-201ENST00000458060 996 ntBASIC16.03■□□□□ 0.16
VIMP08670 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
VIMP08670 AC063952.2-201ENST00000498792 1227 ntBASIC16.03■□□□□ 0.16
VIMP08670 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.03■□□□□ 0.16
VIMP08670 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.03■□□□□ 0.16
VIMP08670 AL139424.1-201ENST00000607572 797 ntBASIC16.03■□□□□ 0.16
VIMP08670 AC114341.1-201ENST00000618070 349 ntBASIC16.03■□□□□ 0.16
VIMP08670 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
VIMP08670 LINC01230-201ENST00000625222 3017 ntBASIC16.03■□□□□ 0.16
VIMP08670 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VIMP08670 AC126365.1-201ENST00000578585 1514 ntBASIC16.03■□□□□ 0.16
VIMP08670 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
VIMP08670 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VIMP08670 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
VIMP08670 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC16.03■□□□□ 0.16
VIMP08670 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VIMP08670 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VIMP08670 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VIMP08670 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.02■□□□□ 0.16
VIMP08670 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC16.02■□□□□ 0.16
VIMP08670 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
VIMP08670 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.02■□□□□ 0.16
VIMP08670 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.02■□□□□ 0.16
VIMP08670 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
VIMP08670 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC16.02■□□□□ 0.16
VIMP08670 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms