Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC14.01□□□□□ -0.17
LMX1BO60663 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.01□□□□□ -0.17
LMX1BO60663 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.01□□□□□ -0.17
LMX1BO60663 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LMX1BO60663 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 TUBB3P1-201ENST00000405796 1332 ntBASIC14.01□□□□□ -0.17
LMX1BO60663 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.01□□□□□ -0.17
LMX1BO60663 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.01□□□□□ -0.17
LMX1BO60663 AC063926.2-201ENST00000623766 1308 ntBASIC14.01□□□□□ -0.17
LMX1BO60663 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
LMX1BO60663 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.01□□□□□ -0.17
LMX1BO60663 AC005034.1-201ENST00000426657 489 ntBASIC14.01□□□□□ -0.17
LMX1BO60663 AC055876.3-201ENST00000431496 288 ntBASIC14.01□□□□□ -0.17
LMX1BO60663 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.01□□□□□ -0.17
LMX1BO60663 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.01□□□□□ -0.17
LMX1BO60663 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.01□□□□□ -0.17
LMX1BO60663 TERF1P3-201ENST00000505638 1227 ntBASIC14.01□□□□□ -0.17
LMX1BO60663 AC079140.1-201ENST00000508039 487 ntBASIC14.01□□□□□ -0.17
LMX1BO60663 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
LMX1BO60663 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.01□□□□□ -0.17
LMX1BO60663 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.01□□□□□ -0.17
LMX1BO60663 AC099522.2-201ENST00000607001 744 ntBASIC14.01□□□□□ -0.17
LMX1BO60663 AC138649.4-201ENST00000612222 287 ntBASIC14.01□□□□□ -0.17
LMX1BO60663 AF228730.6-201ENST00000641497 218 ntBASIC14.01□□□□□ -0.17
LMX1BO60663 AC084121.3-201ENST00000641716 218 ntBASIC14.01□□□□□ -0.17
LMX1BO60663 AC105233.6-201ENST00000642093 218 ntBASIC14.01□□□□□ -0.17
LMX1BO60663 LINC02228-204ENST00000642115 2962 ntBASIC14.01□□□□□ -0.17
LMX1BO60663 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.01□□□□□ -0.17
LMX1BO60663 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.01□□□□□ -0.17
LMX1BO60663 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.01□□□□□ -0.17
LMX1BO60663 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LMX1BO60663 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.01□□□□□ -0.17
LMX1BO60663 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.01□□□□□ -0.17
LMX1BO60663 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 BID-213ENST00000615414 2236 ntTSL 5 BASIC14□□□□□ -0.17
LMX1BO60663 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14□□□□□ -0.17
LMX1BO60663 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14□□□□□ -0.17
LMX1BO60663 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
LMX1BO60663 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14□□□□□ -0.17
LMX1BO60663 AL513477.1-201ENST00000602865 2407 ntBASIC14□□□□□ -0.17
LMX1BO60663 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
LMX1BO60663 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14□□□□□ -0.17
LMX1BO60663 MIR943-201ENST00000401286 94 ntBASIC14□□□□□ -0.17
LMX1BO60663 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14□□□□□ -0.17
LMX1BO60663 AC015922.1-201ENST00000421102 1152 ntBASIC14□□□□□ -0.17
LMX1BO60663 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
LMX1BO60663 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14□□□□□ -0.17
LMX1BO60663 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14□□□□□ -0.17
LMX1BO60663 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
LMX1BO60663 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14□□□□□ -0.17
LMX1BO60663 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14□□□□□ -0.17
LMX1BO60663 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC14□□□□□ -0.17
LMX1BO60663 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14□□□□□ -0.17
LMX1BO60663 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
LMX1BO60663 AP001059.3-201ENST00000619053 235 ntBASIC14□□□□□ -0.17
LMX1BO60663 AL035252.4-201ENST00000624174 288 ntBASIC14□□□□□ -0.17
LMX1BO60663 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14□□□□□ -0.17
LMX1BO60663 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14□□□□□ -0.17
LMX1BO60663 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14□□□□□ -0.17
LMX1BO60663 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
LMX1BO60663 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14□□□□□ -0.17
LMX1BO60663 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms