Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 RRP7BP-205ENST00000566851 833 ntBASIC17.73■□□□□ 0.43
MSH4O15457 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.73■□□□□ 0.43
MSH4O15457 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.73■□□□□ 0.43
MSH4O15457 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.73■□□□□ 0.43
MSH4O15457 AC008494.3-201ENST00000606615 944 ntBASIC17.73■□□□□ 0.43
MSH4O15457 AC007431.3-201ENST00000623221 587 ntBASIC17.73■□□□□ 0.43
MSH4O15457 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
MSH4O15457 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.73■□□□□ 0.43
MSH4O15457 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
MSH4O15457 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.73■□□□□ 0.43
MSH4O15457 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
MSH4O15457 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.72■□□□□ 0.43
MSH4O15457 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.72■□□□□ 0.43
MSH4O15457 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.72■□□□□ 0.43
MSH4O15457 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.72■□□□□ 0.43
MSH4O15457 TP73-209ENST00000603362 1668 ntTSL 5 BASIC17.72■□□□□ 0.43
MSH4O15457 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
MSH4O15457 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.72■□□□□ 0.43
MSH4O15457 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
MSH4O15457 DGCR5-201ENST00000399539 862 ntBASIC17.72■□□□□ 0.43
MSH4O15457 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.72■□□□□ 0.43
MSH4O15457 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.72■□□□□ 0.43
MSH4O15457 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
MSH4O15457 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.72■□□□□ 0.43
MSH4O15457 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.72■□□□□ 0.43
MSH4O15457 AC123567.1-201ENST00000548294 1261 ntBASIC17.72■□□□□ 0.43
MSH4O15457 WASH4P-201ENST00000564273 1246 ntBASIC17.72■□□□□ 0.43
MSH4O15457 AC093726.1-201ENST00000608064 963 ntBASIC17.72■□□□□ 0.43
MSH4O15457 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.72■□□□□ 0.43
MSH4O15457 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.72■□□□□ 0.43
MSH4O15457 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
MSH4O15457 AC105233.6-201ENST00000642093 218 ntBASIC17.72■□□□□ 0.43
MSH4O15457 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.72■□□□□ 0.43
MSH4O15457 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
MSH4O15457 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
MSH4O15457 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSH4O15457 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.72■□□□□ 0.43
MSH4O15457 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
MSH4O15457 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
MSH4O15457 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
MSH4O15457 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.71■□□□□ 0.43
MSH4O15457 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.71■□□□□ 0.43
MSH4O15457 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.71■□□□□ 0.43
MSH4O15457 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 AC127383.1-201ENST00000444697 1800 ntBASIC17.71■□□□□ 0.43
MSH4O15457 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.71■□□□□ 0.43
MSH4O15457 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.71■□□□□ 0.43
MSH4O15457 MYCLP2-201ENST00000449268 967 ntBASIC17.71■□□□□ 0.43
MSH4O15457 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.71■□□□□ 0.43
MSH4O15457 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.71■□□□□ 0.43
MSH4O15457 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
MSH4O15457 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 AC009090.5-201ENST00000624886 2285 ntBASIC17.71■□□□□ 0.43
MSH4O15457 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.71■□□□□ 0.43
MSH4O15457 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.71■□□□□ 0.43
MSH4O15457 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.71■□□□□ 0.43
MSH4O15457 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.71■□□□□ 0.43
MSH4O15457 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH4O15457 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms