Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.5■□□□□ 0.07
HDAC3O15379 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HDAC3O15379 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HDAC3O15379 AL161772.1-201ENST00000610494 4412 ntBASIC15.5■□□□□ 0.07
HDAC3O15379 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HDAC3O15379 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HDAC3O15379 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HDAC3O15379 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HDAC3O15379 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HDAC3O15379 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HDAC3O15379 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HDAC3O15379 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
HDAC3O15379 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
HDAC3O15379 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
HDAC3O15379 AC005089.1-201ENST00000619486 2241 ntBASIC15.49■□□□□ 0.07
HDAC3O15379 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.49■□□□□ 0.07
HDAC3O15379 MROH4P-201ENST00000431302 1578 ntBASIC15.49■□□□□ 0.07
HDAC3O15379 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
HDAC3O15379 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.49■□□□□ 0.07
HDAC3O15379 AC148477.4-201ENST00000613430 1793 ntBASIC15.49■□□□□ 0.07
HDAC3O15379 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
HDAC3O15379 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.49■□□□□ 0.07
HDAC3O15379 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.49■□□□□ 0.07
HDAC3O15379 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.49■□□□□ 0.07
HDAC3O15379 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.49■□□□□ 0.07
HDAC3O15379 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
HDAC3O15379 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HDAC3O15379 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 AC232323.1-201ENST00000540724 2099 ntBASIC15.49■□□□□ 0.07
HDAC3O15379 REXO1L5P-201ENST00000622260 2098 ntBASIC15.49■□□□□ 0.07
HDAC3O15379 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
HDAC3O15379 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 AL645939.2-201ENST00000427340 991 ntBASIC15.49■□□□□ 0.07
HDAC3O15379 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.49■□□□□ 0.07
HDAC3O15379 UNC93B6-202ENST00000528242 690 ntBASIC15.49■□□□□ 0.07
HDAC3O15379 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.49■□□□□ 0.07
HDAC3O15379 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.49■□□□□ 0.07
HDAC3O15379 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.49■□□□□ 0.07
HDAC3O15379 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HDAC3O15379 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
HDAC3O15379 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.49■□□□□ 0.07
HDAC3O15379 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.49■□□□□ 0.07
HDAC3O15379 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HDAC3O15379 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HDAC3O15379 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
HDAC3O15379 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.49■□□□□ 0.07
HDAC3O15379 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
HDAC3O15379 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.49■□□□□ 0.07
HDAC3O15379 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.48■□□□□ 0.07
HDAC3O15379 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
HDAC3O15379 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 FGD5P1-202ENST00000614866 2498 ntBASIC15.48■□□□□ 0.07
HDAC3O15379 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
HDAC3O15379 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.48■□□□□ 0.07
HDAC3O15379 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.48■□□□□ 0.07
HDAC3O15379 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.48■□□□□ 0.07
HDAC3O15379 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.48■□□□□ 0.07
HDAC3O15379 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.48■□□□□ 0.07
HDAC3O15379 AC009947.1-201ENST00000444350 727 ntBASIC15.48■□□□□ 0.07
HDAC3O15379 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.48■□□□□ 0.07
HDAC3O15379 UNC93B7-201ENST00000509439 705 ntBASIC15.48■□□□□ 0.07
HDAC3O15379 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.48■□□□□ 0.07
HDAC3O15379 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HDAC3O15379 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.48■□□□□ 0.07
HDAC3O15379 AC024267.1-201ENST00000582320 895 ntBASIC15.48■□□□□ 0.07
HDAC3O15379 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.48■□□□□ 0.07
HDAC3O15379 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
HDAC3O15379 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms