Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 AC026691.1-201ENST00000602502 2017 ntBASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRIM39Q9HCM9 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 HIST3H2BA-201ENST00000436555 524 ntBASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 AC010336.2-201ENST00000564226 506 ntBASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM39Q9HCM9 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 AC009407.1-201ENST00000568958 598 ntBASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 FLJ16779-201ENST00000612722 7638 ntBASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 AC011477.6-201ENST00000604980 1927 ntBASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.8■□□□□ 0.12
TRIM39Q9HCM9 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 AC023824.1-201ENST00000562945 2975 ntBASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM39Q9HCM9 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms