Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.45■□□□□ 0.22
PCDH9Q9HC56 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 BNIP3P1-202ENST00000550043 1585 ntBASIC16.44■□□□□ 0.22
PCDH9Q9HC56 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PCDH9Q9HC56 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.43■□□□□ 0.22
PCDH9Q9HC56 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 FAM220BP-201ENST00000377689 816 ntBASIC16.43■□□□□ 0.22
PCDH9Q9HC56 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 HLA-H-201ENST00000383620 1096 ntBASIC16.43■□□□□ 0.22
PCDH9Q9HC56 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 RNA5SP410-201ENST00000516285 106 ntBASIC16.43■□□□□ 0.22
PCDH9Q9HC56 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AC027612.4-201ENST00000605371 583 ntBASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AC006538.3-201ENST00000612495 578 ntBASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 AC009093.7-201ENST00000623853 1223 ntBASIC16.43■□□□□ 0.22
PCDH9Q9HC56 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PCDH9Q9HC56 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms