Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.15□□□□□ -0.14
MMP28Q9H239 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC14.15□□□□□ -0.14
MMP28Q9H239 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MMP28Q9H239 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.15
MMP28Q9H239 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
MMP28Q9H239 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.14□□□□□ -0.15
MMP28Q9H239 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC14.14□□□□□ -0.15
MMP28Q9H239 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 FOS-208ENST00000555686 1496 ntTSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.14□□□□□ -0.15
MMP28Q9H239 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.14□□□□□ -0.15
MMP28Q9H239 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.14□□□□□ -0.15
MMP28Q9H239 S100A2-206ENST00000497140 697 ntTSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC14.14□□□□□ -0.15
MMP28Q9H239 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 MTDHP3-201ENST00000594186 672 ntBASIC14.14□□□□□ -0.15
MMP28Q9H239 AL121912.1-201ENST00000603683 238 ntBASIC14.14□□□□□ -0.15
MMP28Q9H239 AC008608.2-201ENST00000606089 416 ntBASIC14.14□□□□□ -0.15
MMP28Q9H239 AL355877.3-201ENST00000622820 899 ntBASIC14.14□□□□□ -0.15
MMP28Q9H239 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.14□□□□□ -0.15
MMP28Q9H239 AL512652.2-201ENST00000625156 1716 ntBASIC14.14□□□□□ -0.15
MMP28Q9H239 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 AC006504.5-208ENST00000588784 2401 ntBASIC14.14□□□□□ -0.15
MMP28Q9H239 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.14□□□□□ -0.15
MMP28Q9H239 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.14□□□□□ -0.15
MMP28Q9H239 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.14□□□□□ -0.15
MMP28Q9H239 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
MMP28Q9H239 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
MMP28Q9H239 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MMP28Q9H239 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.13□□□□□ -0.15
MMP28Q9H239 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
MMP28Q9H239 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.13□□□□□ -0.15
MMP28Q9H239 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.13□□□□□ -0.15
MMP28Q9H239 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.13□□□□□ -0.15
MMP28Q9H239 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.13□□□□□ -0.15
MMP28Q9H239 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.13□□□□□ -0.15
MMP28Q9H239 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.13□□□□□ -0.15
MMP28Q9H239 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.13□□□□□ -0.15
MMP28Q9H239 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 MIR648-201ENST00000385046 94 ntBASIC14.13□□□□□ -0.15
MMP28Q9H239 SCARNA2-201ENST00000458748 420 ntBASIC14.13□□□□□ -0.15
MMP28Q9H239 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC14.13□□□□□ -0.15
MMP28Q9H239 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC14.13□□□□□ -0.15
MMP28Q9H239 IRF8-202ENST00000562492 946 ntTSL 3 BASIC14.13□□□□□ -0.15
MMP28Q9H239 SLC25A6P4-201ENST00000586535 553 ntBASIC14.13□□□□□ -0.15
MMP28Q9H239 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC14.13□□□□□ -0.15
MMP28Q9H239 CALM3-211ENST00000598871 561 ntTSL 4 BASIC14.13□□□□□ -0.15
MMP28Q9H239 COPE-211ENST00000600932 1144 ntTSL 5 BASIC14.13□□□□□ -0.15
MMP28Q9H239 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC14.13□□□□□ -0.15
MMP28Q9H239 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
MMP28Q9H239 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC14.13□□□□□ -0.15
MMP28Q9H239 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.13□□□□□ -0.15
MMP28Q9H239 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
MMP28Q9H239 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
MMP28Q9H239 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
MMP28Q9H239 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
MMP28Q9H239 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms