Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 RNA5SP421-201ENST00000516864 134 ntBASIC19■□□□□ 0.63
CHMP4CQ96CF2 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 COQ4-205ENST00000609948 956 ntTSL 2 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 AL158211.3-201ENST00000607385 239 ntBASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP4CQ96CF2 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 AC105917.1-201ENST00000506637 2539 ntBASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 LITAF-210ENST00000571976 548 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 LITAF-214ENST00000574703 486 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 RN7SL204P-201ENST00000582831 262 ntBASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 AC138761.1-201ENST00000584393 385 ntBASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 AC008741.2-201ENST00000612792 3115 ntBASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 AC010491.1-201ENST00000563101 2797 ntBASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.98■□□□□ 0.63
CHMP4CQ96CF2 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms