Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 ACTBP11-201ENST00000436287 1126 ntBASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 AC023310.3-201ENST00000557027 670 ntBASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 AC100756.1-201ENST00000562736 682 ntBASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 AC138749.3-201ENST00000567691 622 ntBASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 SRD5A3P1-201ENST00000603021 949 ntBASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 AC116165.1-201ENST00000611806 668 ntBASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
NKX2-3Q8TAU0 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 AC007389.4-201ENST00000454674 793 ntBASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 SDHAP3-202ENST00000515467 728 ntBASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 ORC6-206ENST00000568364 888 ntTSL 5 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 AC022188.1-201ENST00000620960 1664 ntBASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
NKX2-3Q8TAU0 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 SERBP1P3-201ENST00000459980 809 ntBASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 MIR4538-201ENST00000581377 78 ntBASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 MIR6775-201ENST00000617557 69 ntBASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
NKX2-3Q8TAU0 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms