Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 AC138035.3-201ENST00000622706 2791 ntBASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 TFAMP1-201ENST00000412727 736 ntBASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 AL671277.1-201ENST00000429656 993 ntBASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 AC098859.1-201ENST00000502915 1238 ntBASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 AC061975.2-201ENST00000581722 295 ntBASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 RNA5SP410-201ENST00000516285 106 ntBASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 FAM197Y3-203ENST00000618346 717 ntBASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 BNIP3P1-202ENST00000550043 1585 ntBASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 TMBIM7P-203ENST00000641617 1718 ntBASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 AC090616.6-203ENST00000579186 1945 ntBASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 AC105250.1-201ENST00000509378 2057 ntBASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLHC1Q8NHS4 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLHC1Q8NHS4 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLHC1Q8NHS4 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLHC1Q8NHS4 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.3■□□□□ 0.04
CLHC1Q8NHS4 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLHC1Q8NHS4 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CLHC1Q8NHS4 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLHC1Q8NHS4 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms