Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 LOX-206ENST00000639739 1626 ntTSL 5 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 GOLGA2P4-201ENST00000441462 777 ntBASIC19.59■□□□□ 0.73
SYNE4Q8N205 PFN1P12-201ENST00000455938 534 ntBASIC19.59■□□□□ 0.73
SYNE4Q8N205 RPL13AP25-201ENST00000484130 612 ntBASIC19.59■□□□□ 0.73
SYNE4Q8N205 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 AC107373.2-201ENST00000607735 490 ntBASIC19.59■□□□□ 0.73
SYNE4Q8N205 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SYNE4Q8N205 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SYNE4Q8N205 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE4Q8N205 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE4Q8N205 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE4Q8N205 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE4Q8N205 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE4Q8N205 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE4Q8N205 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE4Q8N205 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE4Q8N205 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE4Q8N205 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE4Q8N205 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SYNE4Q8N205 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 AP001063.1-201ENST00000568332 529 ntBASIC19.58■□□□□ 0.72
SYNE4Q8N205 AC015910.1-201ENST00000579400 975 ntBASIC19.58■□□□□ 0.72
SYNE4Q8N205 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 METTL26-214ENST00000614890 801 ntTSL 3 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 AL139099.5-201ENST00000635274 300 ntBASIC19.58■□□□□ 0.72
SYNE4Q8N205 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE4Q8N205 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE4Q8N205 AC011477.6-201ENST00000604980 1927 ntBASIC19.58■□□□□ 0.72
SYNE4Q8N205 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 FLII-221ENST00000578558 2377 ntTSL 5 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE4Q8N205 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE4Q8N205 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE4Q8N205 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE4Q8N205 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE4Q8N205 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SYNE4Q8N205 POLL-217ENST00000628479 1953 ntTSL 5 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE4Q8N205 AC124067.4-201ENST00000519691 2379 ntBASIC19.57■□□□□ 0.72
SYNE4Q8N205 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE4Q8N205 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE4Q8N205 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE4Q8N205 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 TK1-203ENST00000588734 1681 ntTSL 2 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE4Q8N205 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE4Q8N205 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE4Q8N205 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 EMC4-209ENST00000559421 497 ntTSL 2 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 IFT20-206ENST00000578122 834 ntTSL 2 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 IFT20-208ENST00000578985 831 ntTSL 3 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SYNE4Q8N205 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE4Q8N205 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE4Q8N205 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE4Q8N205 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms