Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 AC009093.2-202ENST00000620513 2079 ntBASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 AC124067.4-201ENST00000519691 2379 ntBASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 SP100-205ENST00000409824 1802 ntTSL 5 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 AC120498.9-201ENST00000339021 3867 ntBASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 AC104073.2-201ENST00000453737 312 ntBASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 AC134698.3-201ENST00000523880 214 ntBASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 BNIP3P13-201ENST00000599968 566 ntBASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC10.42□□□□□ -0.74
VPS13DQ5THJ4 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 AC011840.2-201ENST00000563063 1520 ntBASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 DPM3-202ENST00000368399 517 ntBASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 HNRNPA1P63-201ENST00000427917 963 ntBASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 LSM5-207ENST00000410044 687 ntTSL 3 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 POM121L8P-201ENST00000417732 1281 ntBASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 POM121L9P-203ENST00000441984 1285 ntBASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 AC245884.6-201ENST00000515672 1067 ntBASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 MIR6756-201ENST00000616240 63 ntBASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 YRDCP1-201ENST00000621419 643 ntBASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
VPS13DQ5THJ4 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC10.4□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms