Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
USP39Q53GS9 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
USP39Q53GS9 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.16■□□□□ 0.18
USP39Q53GS9 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
USP39Q53GS9 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
USP39Q53GS9 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
USP39Q53GS9 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
USP39Q53GS9 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.16■□□□□ 0.18
USP39Q53GS9 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.16■□□□□ 0.18
USP39Q53GS9 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.16■□□□□ 0.18
USP39Q53GS9 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.16■□□□□ 0.18
USP39Q53GS9 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.16■□□□□ 0.18
USP39Q53GS9 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.16■□□□□ 0.18
USP39Q53GS9 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.16■□□□□ 0.18
USP39Q53GS9 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.16■□□□□ 0.18
USP39Q53GS9 MIR4259-201ENST00000584466 101 ntBASIC16.16■□□□□ 0.18
USP39Q53GS9 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
USP39Q53GS9 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
USP39Q53GS9 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
USP39Q53GS9 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.16■□□□□ 0.18
USP39Q53GS9 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
USP39Q53GS9 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.16■□□□□ 0.18
USP39Q53GS9 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.16■□□□□ 0.18
USP39Q53GS9 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
USP39Q53GS9 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
USP39Q53GS9 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.16■□□□□ 0.18
USP39Q53GS9 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.16■□□□□ 0.18
USP39Q53GS9 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.16■□□□□ 0.18
USP39Q53GS9 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
USP39Q53GS9 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
USP39Q53GS9 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
USP39Q53GS9 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
USP39Q53GS9 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.15■□□□□ 0.18
USP39Q53GS9 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
USP39Q53GS9 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
USP39Q53GS9 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC16.15■□□□□ 0.18
USP39Q53GS9 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
USP39Q53GS9 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.15■□□□□ 0.18
USP39Q53GS9 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
USP39Q53GS9 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.15■□□□□ 0.18
USP39Q53GS9 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.15■□□□□ 0.18
USP39Q53GS9 AC104989.1-201ENST00000519711 778 ntBASIC16.15■□□□□ 0.18
USP39Q53GS9 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.15■□□□□ 0.18
USP39Q53GS9 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.15■□□□□ 0.18
USP39Q53GS9 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.15■□□□□ 0.18
USP39Q53GS9 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.15■□□□□ 0.18
USP39Q53GS9 AC008735.3-201ENST00000596646 500 ntBASIC16.15■□□□□ 0.18
USP39Q53GS9 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
USP39Q53GS9 MIR6775-201ENST00000617557 69 ntBASIC16.15■□□□□ 0.18
USP39Q53GS9 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 AL033527.4-201ENST00000641026 673 ntBASIC16.15■□□□□ 0.18
USP39Q53GS9 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.15■□□□□ 0.18
USP39Q53GS9 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
USP39Q53GS9 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.15■□□□□ 0.18
USP39Q53GS9 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.15■□□□□ 0.18
USP39Q53GS9 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
USP39Q53GS9 ME2P1-201ENST00000426028 1970 ntBASIC16.15■□□□□ 0.18
USP39Q53GS9 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
USP39Q53GS9 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
USP39Q53GS9 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
USP39Q53GS9 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.14■□□□□ 0.18
USP39Q53GS9 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.14■□□□□ 0.17
USP39Q53GS9 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
USP39Q53GS9 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.14■□□□□ 0.17
USP39Q53GS9 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.14■□□□□ 0.17
USP39Q53GS9 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
USP39Q53GS9 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
USP39Q53GS9 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
USP39Q53GS9 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
USP39Q53GS9 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.14■□□□□ 0.17
USP39Q53GS9 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.14■□□□□ 0.17
USP39Q53GS9 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
USP39Q53GS9 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.14■□□□□ 0.17
USP39Q53GS9 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.14■□□□□ 0.17
USP39Q53GS9 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
USP39Q53GS9 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.14■□□□□ 0.17
USP39Q53GS9 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.14■□□□□ 0.17
USP39Q53GS9 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.14■□□□□ 0.17
USP39Q53GS9 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.14■□□□□ 0.17
USP39Q53GS9 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.14■□□□□ 0.17
USP39Q53GS9 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.14■□□□□ 0.17
USP39Q53GS9 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.14■□□□□ 0.17
USP39Q53GS9 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
USP39Q53GS9 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.14■□□□□ 0.17
USP39Q53GS9 AC025048.3-201ENST00000590609 569 ntBASIC16.14■□□□□ 0.17
USP39Q53GS9 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms