Protein–RNA interactions for Protein: Q12829

RAB40B, Ras-related protein Rab-40B, humanhuman

Predictions only

Length 278 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40BQ12829 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 AKR1C7P-201ENST00000305623 895 ntBASIC14.28□□□□□ -0.12
RAB40BQ12829 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 INIP-202ENST00000374236 874 ntTSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.28□□□□□ -0.12
RAB40BQ12829 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.28□□□□□ -0.12
RAB40BQ12829 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.28□□□□□ -0.12
RAB40BQ12829 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC14.28□□□□□ -0.12
RAB40BQ12829 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC14.28□□□□□ -0.12
RAB40BQ12829 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.28□□□□□ -0.12
RAB40BQ12829 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC14.28□□□□□ -0.12
RAB40BQ12829 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.28□□□□□ -0.12
RAB40BQ12829 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.28□□□□□ -0.12
RAB40BQ12829 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC14.28□□□□□ -0.12
RAB40BQ12829 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 MIR4313-201ENST00000580760 101 ntBASIC14.28□□□□□ -0.12
RAB40BQ12829 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
RAB40BQ12829 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
RAB40BQ12829 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.28□□□□□ -0.12
RAB40BQ12829 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
RAB40BQ12829 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.28□□□□□ -0.12
RAB40BQ12829 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RAB40BQ12829 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RAB40BQ12829 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RAB40BQ12829 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RAB40BQ12829 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RAB40BQ12829 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RAB40BQ12829 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
RAB40BQ12829 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RAB40BQ12829 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
RAB40BQ12829 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RAB40BQ12829 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
RAB40BQ12829 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.27□□□□□ -0.12
RAB40BQ12829 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.27□□□□□ -0.12
RAB40BQ12829 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.27□□□□□ -0.12
RAB40BQ12829 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
RAB40BQ12829 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.27□□□□□ -0.12
RAB40BQ12829 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RAB40BQ12829 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
RAB40BQ12829 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.27□□□□□ -0.12
RAB40BQ12829 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RAB40BQ12829 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
RAB40BQ12829 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
RAB40BQ12829 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
RAB40BQ12829 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 AC092474.2-201ENST00000424288 719 ntBASIC14.27□□□□□ -0.13
RAB40BQ12829 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC14.27□□□□□ -0.13
RAB40BQ12829 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 AF238378.1-201ENST00000526806 358 ntBASIC14.27□□□□□ -0.13
RAB40BQ12829 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC14.27□□□□□ -0.13
RAB40BQ12829 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.27□□□□□ -0.13
RAB40BQ12829 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC14.27□□□□□ -0.13
RAB40BQ12829 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC14.27□□□□□ -0.13
RAB40BQ12829 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
RAB40BQ12829 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.27□□□□□ -0.13
RAB40BQ12829 LINC01711-201ENST00000598340 967 ntBASIC14.27□□□□□ -0.13
RAB40BQ12829 AC093458.2-201ENST00000623150 629 ntBASIC14.27□□□□□ -0.13
RAB40BQ12829 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 AL359258.3-201ENST00000622910 2331 ntBASIC14.27□□□□□ -0.13
RAB40BQ12829 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
RAB40BQ12829 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 AC023024.2-201ENST00000623561 1993 ntBASIC14.27□□□□□ -0.13
RAB40BQ12829 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RAB40BQ12829 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.13
RAB40BQ12829 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RAB40BQ12829 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms