Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.94■□□□□ 0.46
CCNA1P78396 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCNA1P78396 MIR3615-201ENST00000581999 87 ntBASIC17.94■□□□□ 0.46
CCNA1P78396 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.94■□□□□ 0.46
CCNA1P78396 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC17.94■□□□□ 0.46
CCNA1P78396 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.94■□□□□ 0.46
CCNA1P78396 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC17.94■□□□□ 0.46
CCNA1P78396 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCNA1P78396 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC17.94■□□□□ 0.46
CCNA1P78396 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCNA1P78396 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CCNA1P78396 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CCNA1P78396 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCNA1P78396 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCNA1P78396 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCNA1P78396 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.94■□□□□ 0.46
CCNA1P78396 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.93■□□□□ 0.46
CCNA1P78396 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCNA1P78396 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 TP73-209ENST00000603362 1668 ntTSL 5 BASIC17.93■□□□□ 0.46
CCNA1P78396 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.93■□□□□ 0.46
CCNA1P78396 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CCNA1P78396 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.93■□□□□ 0.46
CCNA1P78396 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.93■□□□□ 0.46
CCNA1P78396 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCNA1P78396 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CCNA1P78396 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 GUK1-206ENST00000366723 845 ntTSL 5 BASIC17.93■□□□□ 0.46
CCNA1P78396 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CCNA1P78396 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.93■□□□□ 0.46
CCNA1P78396 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.93■□□□□ 0.46
CCNA1P78396 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.93■□□□□ 0.46
CCNA1P78396 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCNA1P78396 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC17.93■□□□□ 0.46
CCNA1P78396 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CCNA1P78396 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CCNA1P78396 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.93■□□□□ 0.46
CCNA1P78396 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCNA1P78396 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCNA1P78396 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CCNA1P78396 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCNA1P78396 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CCNA1P78396 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.92■□□□□ 0.46
CCNA1P78396 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC17.92■□□□□ 0.46
CCNA1P78396 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.92■□□□□ 0.46
CCNA1P78396 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.92■□□□□ 0.46
CCNA1P78396 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.92■□□□□ 0.46
CCNA1P78396 ALOX12P2-203ENST00000570921 1945 ntBASIC17.92■□□□□ 0.46
CCNA1P78396 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.92■□□□□ 0.46
CCNA1P78396 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 MIR648-201ENST00000385046 94 ntBASIC17.92■□□□□ 0.46
CCNA1P78396 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.92■□□□□ 0.46
CCNA1P78396 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.92■□□□□ 0.46
CCNA1P78396 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.92■□□□□ 0.46
CCNA1P78396 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.92■□□□□ 0.46
CCNA1P78396 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.92■□□□□ 0.46
CCNA1P78396 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.92■□□□□ 0.46
CCNA1P78396 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.92■□□□□ 0.46
CCNA1P78396 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CCNA1P78396 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.92■□□□□ 0.46
CCNA1P78396 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.92■□□□□ 0.46
CCNA1P78396 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CCNA1P78396 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.92■□□□□ 0.46
CCNA1P78396 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.92■□□□□ 0.46
CCNA1P78396 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCNA1P78396 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.91■□□□□ 0.46
CCNA1P78396 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.91■□□□□ 0.46
CCNA1P78396 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CCNA1P78396 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.91■□□□□ 0.46
CCNA1P78396 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.91■□□□□ 0.46
CCNA1P78396 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.91■□□□□ 0.46
CCNA1P78396 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms