Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 CREBL2-201ENST00000228865 3754 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 MTHFR-217ENST00000641820 1569 ntBASIC11.25□□□□□ -0.61
CKS1BP61024 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 NABP1-203ENST00000409510 843 ntTSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 S100A2-206ENST00000497140 697 ntTSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC11.25□□□□□ -0.61
CKS1BP61024 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 AL121672.3-201ENST00000608644 468 ntBASIC11.25□□□□□ -0.61
CKS1BP61024 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC11.25□□□□□ -0.61
CKS1BP61024 AC006011.2-201ENST00000621313 1158 ntBASIC11.25□□□□□ -0.61
CKS1BP61024 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 C1R-201ENST00000535233 2211 ntTSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
CKS1BP61024 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 NRXN1-210ENST00000406316 9375 ntAPPRIS P3 TSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 KRT8P49-201ENST00000604166 1432 ntBASIC11.25□□□□□ -0.61
CKS1BP61024 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC11.25□□□□□ -0.61
CKS1BP61024 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
CKS1BP61024 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CKS1BP61024 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
CKS1BP61024 SLC8A3-205ENST00000394330 2622 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC11.24□□□□□ -0.61
CKS1BP61024 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
CKS1BP61024 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC11.24□□□□□ -0.61
CKS1BP61024 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC11.24□□□□□ -0.61
CKS1BP61024 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC11.24□□□□□ -0.61
CKS1BP61024 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 DIAPH2-201ENST00000324765 9333 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC11.24□□□□□ -0.61
CKS1BP61024 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC11.24□□□□□ -0.61
CKS1BP61024 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC11.24□□□□□ -0.61
CKS1BP61024 SPDYE13P-201ENST00000445314 798 ntBASIC11.24□□□□□ -0.61
CKS1BP61024 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CKS1BP61024 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC11.24□□□□□ -0.61
CKS1BP61024 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC11.24□□□□□ -0.61
CKS1BP61024 AC096582.2-201ENST00000510860 516 ntBASIC11.24□□□□□ -0.61
CKS1BP61024 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC11.24□□□□□ -0.61
CKS1BP61024 AC022616.7-201ENST00000525383 220 ntBASIC11.24□□□□□ -0.61
CKS1BP61024 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC11.24□□□□□ -0.61
CKS1BP61024 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC11.24□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms