Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.59■□□□□ 0.57
RHBDL3P58872 CYP2T1P-202ENST00000641596 2535 ntBASIC18.59■□□□□ 0.57
RHBDL3P58872 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
RHBDL3P58872 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RHBDL3P58872 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.58■□□□□ 0.57
RHBDL3P58872 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RHBDL3P58872 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
RHBDL3P58872 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RHBDL3P58872 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RHBDL3P58872 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
RHBDL3P58872 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RHBDL3P58872 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
RHBDL3P58872 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.58■□□□□ 0.57
RHBDL3P58872 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RHBDL3P58872 MPV17-206ENST00000402722 827 ntTSL 3 BASIC18.58■□□□□ 0.56
RHBDL3P58872 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC18.58■□□□□ 0.56
RHBDL3P58872 FO681548.1-201ENST00000455617 1132 ntBASIC18.58■□□□□ 0.56
RHBDL3P58872 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
RHBDL3P58872 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.58■□□□□ 0.56
RHBDL3P58872 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC18.58■□□□□ 0.56
RHBDL3P58872 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.58■□□□□ 0.56
RHBDL3P58872 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC18.58■□□□□ 0.56
RHBDL3P58872 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
RHBDL3P58872 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.58■□□□□ 0.56
RHBDL3P58872 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
RHBDL3P58872 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RHBDL3P58872 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.58■□□□□ 0.56
RHBDL3P58872 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RHBDL3P58872 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
RHBDL3P58872 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RHBDL3P58872 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
RHBDL3P58872 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RHBDL3P58872 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RHBDL3P58872 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.58■□□□□ 0.56
RHBDL3P58872 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
RHBDL3P58872 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
RHBDL3P58872 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
RHBDL3P58872 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
RHBDL3P58872 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
RHBDL3P58872 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
RHBDL3P58872 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.57■□□□□ 0.56
RHBDL3P58872 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.57■□□□□ 0.56
RHBDL3P58872 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
RHBDL3P58872 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18.57■□□□□ 0.56
RHBDL3P58872 AP001582.1-201ENST00000525856 295 ntBASIC18.57■□□□□ 0.56
RHBDL3P58872 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.57■□□□□ 0.56
RHBDL3P58872 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.57■□□□□ 0.56
RHBDL3P58872 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC18.57■□□□□ 0.56
RHBDL3P58872 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.57■□□□□ 0.56
RHBDL3P58872 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
RHBDL3P58872 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.57■□□□□ 0.56
RHBDL3P58872 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
RHBDL3P58872 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.57■□□□□ 0.56
RHBDL3P58872 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.57■□□□□ 0.56
RHBDL3P58872 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 AL138799.1-201ENST00000448213 1675 ntBASIC18.57■□□□□ 0.56
RHBDL3P58872 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RHBDL3P58872 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RHBDL3P58872 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.56■□□□□ 0.56
RHBDL3P58872 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
RHBDL3P58872 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
RHBDL3P58872 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RHBDL3P58872 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
RHBDL3P58872 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.56■□□□□ 0.56
RHBDL3P58872 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RHBDL3P58872 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RHBDL3P58872 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
RHBDL3P58872 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RHBDL3P58872 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.56■□□□□ 0.56
RHBDL3P58872 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RHBDL3P58872 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
RHBDL3P58872 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
RHBDL3P58872 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
RHBDL3P58872 AC016694.1-201ENST00000434179 700 ntBASIC18.56■□□□□ 0.56
RHBDL3P58872 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RHBDL3P58872 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC18.56■□□□□ 0.56
RHBDL3P58872 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC18.56■□□□□ 0.56
RHBDL3P58872 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC18.56■□□□□ 0.56
RHBDL3P58872 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RHBDL3P58872 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RHBDL3P58872 KRT90P-201ENST00000549264 1064 ntBASIC18.56■□□□□ 0.56
RHBDL3P58872 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.56■□□□□ 0.56
RHBDL3P58872 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC18.56■□□□□ 0.56
RHBDL3P58872 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
RHBDL3P58872 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms