Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.07□□□□□ -0.16
SOX2P48431 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.07□□□□□ -0.16
SOX2P48431 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX2P48431 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX2P48431 ATP6V0CP3-201ENST00000417255 467 ntBASIC14.07□□□□□ -0.16
SOX2P48431 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
SOX2P48431 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.07□□□□□ -0.16
SOX2P48431 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
SOX2P48431 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
SOX2P48431 BMF-207ENST00000559701 630 ntTSL 3 BASIC14.07□□□□□ -0.16
SOX2P48431 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX2P48431 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 TCAF2P1-201ENST00000291129 2421 ntBASIC14.07□□□□□ -0.16
SOX2P48431 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX2P48431 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SOX2P48431 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
SOX2P48431 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX2P48431 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
SOX2P48431 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
SOX2P48431 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.07□□□□□ -0.16
SOX2P48431 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX2P48431 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX2P48431 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX2P48431 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
SOX2P48431 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
SOX2P48431 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
SOX2P48431 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.06□□□□□ -0.16
SOX2P48431 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX2P48431 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SOX2P48431 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX2P48431 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.06□□□□□ -0.16
SOX2P48431 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SOX2P48431 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.06□□□□□ -0.16
SOX2P48431 CICP24-201ENST00000605464 2705 ntBASIC14.06□□□□□ -0.16
SOX2P48431 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX2P48431 SLC4A1APP2-201ENST00000424054 1259 ntBASIC14.06□□□□□ -0.16
SOX2P48431 AC245100.5-201ENST00000452108 331 ntBASIC14.06□□□□□ -0.16
SOX2P48431 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX2P48431 AC092910.1-201ENST00000482027 1129 ntBASIC14.06□□□□□ -0.16
SOX2P48431 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 CFL1-202ENST00000524553 860 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX2P48431 POLD4-207ENST00000531239 584 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX2P48431 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.06□□□□□ -0.16
SOX2P48431 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.06□□□□□ -0.16
SOX2P48431 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
SOX2P48431 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SOX2P48431 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.06□□□□□ -0.16
SOX2P48431 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.06□□□□□ -0.16
SOX2P48431 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
SOX2P48431 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
SOX2P48431 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX2P48431 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.06□□□□□ -0.16
SOX2P48431 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.05□□□□□ -0.16
SOX2P48431 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX2P48431 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms