Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 HLA-DQB2-229ENST00000411527 1059 ntBASIC13.86□□□□□ -0.19
COL8A1P27658 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL8A1P27658 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
COL8A1P27658 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.86□□□□□ -0.19
COL8A1P27658 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC13.86□□□□□ -0.19
COL8A1P27658 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL8A1P27658 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC13.86□□□□□ -0.19
COL8A1P27658 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
COL8A1P27658 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.86□□□□□ -0.19
COL8A1P27658 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC13.86□□□□□ -0.19
COL8A1P27658 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.86□□□□□ -0.19
COL8A1P27658 EEF1DP1-201ENST00000585891 896 ntBASIC13.86□□□□□ -0.19
COL8A1P27658 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 AC006213.4-201ENST00000616184 634 ntBASIC13.86□□□□□ -0.19
COL8A1P27658 AC080080.1-201ENST00000625121 2420 ntBASIC13.86□□□□□ -0.19
COL8A1P27658 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 CYP4F24P-201ENST00000586049 1580 ntBASIC13.86□□□□□ -0.19
COL8A1P27658 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL8A1P27658 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 Z97205.2-201ENST00000564697 1639 ntBASIC13.86□□□□□ -0.19
COL8A1P27658 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL8A1P27658 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 AC124067.4-201ENST00000519691 2379 ntBASIC13.86□□□□□ -0.19
COL8A1P27658 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
COL8A1P27658 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL8A1P27658 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.85□□□□□ -0.19
COL8A1P27658 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.85□□□□□ -0.19
COL8A1P27658 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.85□□□□□ -0.19
COL8A1P27658 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.85□□□□□ -0.19
COL8A1P27658 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.85□□□□□ -0.19
COL8A1P27658 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC13.85□□□□□ -0.19
COL8A1P27658 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC13.85□□□□□ -0.19
COL8A1P27658 AC004898.1-201ENST00000451057 766 ntBASIC13.85□□□□□ -0.19
COL8A1P27658 AC091804.1-201ENST00000486888 567 ntBASIC13.85□□□□□ -0.19
COL8A1P27658 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
COL8A1P27658 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 FTLP10-202ENST00000505798 471 ntBASIC13.85□□□□□ -0.19
COL8A1P27658 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC13.85□□□□□ -0.19
COL8A1P27658 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.85□□□□□ -0.19
COL8A1P27658 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
COL8A1P27658 GNRHR2-203ENST00000581100 1187 ntBASIC13.85□□□□□ -0.19
COL8A1P27658 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.85□□□□□ -0.19
COL8A1P27658 AC005252.2-201ENST00000624630 1141 ntBASIC13.85□□□□□ -0.19
COL8A1P27658 AC138627.1-207ENST00000641560 1006 ntBASIC13.85□□□□□ -0.19
COL8A1P27658 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
COL8A1P27658 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC13.85□□□□□ -0.19
COL8A1P27658 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
COL8A1P27658 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
COL8A1P27658 AD000864.1-201ENST00000624076 2295 ntBASIC13.85□□□□□ -0.19
COL8A1P27658 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC13.85□□□□□ -0.19
COL8A1P27658 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
COL8A1P27658 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL8A1P27658 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC13.85□□□□□ -0.19
COL8A1P27658 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
COL8A1P27658 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC13.85□□□□□ -0.19
COL8A1P27658 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC13.85□□□□□ -0.19
COL8A1P27658 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
COL8A1P27658 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
COL8A1P27658 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.84□□□□□ -0.19
COL8A1P27658 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC13.84□□□□□ -0.19
COL8A1P27658 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms