Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
COL5A1P20908 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC14.96□□□□□ -0.01
COL5A1P20908 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
COL5A1P20908 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.96□□□□□ -0.01
COL5A1P20908 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC14.96□□□□□ -0.01
COL5A1P20908 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.96□□□□□ -0.01
COL5A1P20908 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.96□□□□□ -0.01
COL5A1P20908 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC14.96□□□□□ -0.01
COL5A1P20908 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.96□□□□□ -0.01
COL5A1P20908 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC14.96□□□□□ -0.01
COL5A1P20908 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC14.96□□□□□ -0.01
COL5A1P20908 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.96□□□□□ -0.01
COL5A1P20908 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14.96□□□□□ -0.01
COL5A1P20908 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.96□□□□□ -0.01
COL5A1P20908 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.96□□□□□ -0.01
COL5A1P20908 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC14.96□□□□□ -0.01
COL5A1P20908 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
COL5A1P20908 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.96□□□□□ -0.01
COL5A1P20908 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 KRT8P19-201ENST00000551916 1455 ntBASIC14.96□□□□□ -0.01
COL5A1P20908 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC14.96□□□□□ -0.01
COL5A1P20908 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
COL5A1P20908 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.96□□□□□ -0.01
COL5A1P20908 KLF2P2-201ENST00000416807 1039 ntBASIC14.96□□□□□ -0.01
COL5A1P20908 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC14.96□□□□□ -0.01
COL5A1P20908 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
COL5A1P20908 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC14.96□□□□□ -0.01
COL5A1P20908 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 HIST2H2BC-201ENST00000498492 580 ntBASIC14.96□□□□□ -0.01
COL5A1P20908 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC14.96□□□□□ -0.01
COL5A1P20908 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL5A1P20908 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.96□□□□□ -0.01
COL5A1P20908 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
COL5A1P20908 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
COL5A1P20908 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL5A1P20908 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.96□□□□□ -0.02
COL5A1P20908 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL5A1P20908 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL5A1P20908 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
COL5A1P20908 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
COL5A1P20908 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.95□□□□□ -0.02
COL5A1P20908 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 AL662844.4-201ENST00000606367 2838 ntBASIC14.95□□□□□ -0.02
COL5A1P20908 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
COL5A1P20908 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 UPF3AP2-201ENST00000457924 1132 ntBASIC14.95□□□□□ -0.02
COL5A1P20908 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.95□□□□□ -0.02
COL5A1P20908 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.95□□□□□ -0.02
COL5A1P20908 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.95□□□□□ -0.02
COL5A1P20908 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 RN7SL48P-201ENST00000579283 293 ntBASIC14.95□□□□□ -0.02
COL5A1P20908 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14.95□□□□□ -0.02
COL5A1P20908 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 KLK11-210ENST00000600362 759 ntTSL 3 BASIC14.95□□□□□ -0.02
COL5A1P20908 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.95□□□□□ -0.02
COL5A1P20908 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.95□□□□□ -0.02
COL5A1P20908 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.95□□□□□ -0.02
COL5A1P20908 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC14.95□□□□□ -0.02
COL5A1P20908 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC14.95□□□□□ -0.02
COL5A1P20908 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 AL138799.1-201ENST00000448213 1675 ntBASIC14.95□□□□□ -0.02
COL5A1P20908 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
COL5A1P20908 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL5A1P20908 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
COL5A1P20908 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms