Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
COL11A1P12107 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL11A1P12107 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.71■□□□□ 0.42
COL11A1P12107 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
COL11A1P12107 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 PRORSD1P-202ENST00000563365 2154 ntBASIC17.7■□□□□ 0.42
COL11A1P12107 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
COL11A1P12107 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 LRRC59-203ENST00000576448 1531 ntBASIC17.7■□□□□ 0.42
COL11A1P12107 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 ACKR1-201ENST00000368121 1240 ntBASIC17.7■□□□□ 0.42
COL11A1P12107 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 GOLGA2P4-201ENST00000441462 777 ntBASIC17.7■□□□□ 0.42
COL11A1P12107 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
COL11A1P12107 HSPB1P2-201ENST00000448722 546 ntBASIC17.7■□□□□ 0.42
COL11A1P12107 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC17.7■□□□□ 0.42
COL11A1P12107 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.7■□□□□ 0.42
COL11A1P12107 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.7■□□□□ 0.42
COL11A1P12107 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
COL11A1P12107 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
COL11A1P12107 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.7■□□□□ 0.42
COL11A1P12107 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
COL11A1P12107 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.7■□□□□ 0.42
COL11A1P12107 LINC02199-201ENST00000506655 2702 ntBASIC17.7■□□□□ 0.42
COL11A1P12107 AC006001.1-201ENST00000325130 474 ntBASIC17.7■□□□□ 0.42
COL11A1P12107 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.7■□□□□ 0.42
COL11A1P12107 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
COL11A1P12107 AC104457.1-201ENST00000401024 814 ntBASIC17.7■□□□□ 0.42
COL11A1P12107 MIR663B-201ENST00000408361 115 ntBASIC17.7■□□□□ 0.42
COL11A1P12107 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.7■□□□□ 0.42
COL11A1P12107 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.7■□□□□ 0.42
COL11A1P12107 SAMD11P1-201ENST00000571429 661 ntBASIC17.7■□□□□ 0.42
COL11A1P12107 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 AP005019.2-201ENST00000615104 511 ntBASIC17.7■□□□□ 0.42
COL11A1P12107 AC006453.4-201ENST00000636949 1252 ntBASIC17.7■□□□□ 0.42
COL11A1P12107 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL11A1P12107 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.69■□□□□ 0.42
COL11A1P12107 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.69■□□□□ 0.42
COL11A1P12107 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.69■□□□□ 0.42
COL11A1P12107 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
COL11A1P12107 GPAA1P2-201ENST00000417923 928 ntBASIC17.69■□□□□ 0.42
COL11A1P12107 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC17.69■□□□□ 0.42
COL11A1P12107 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC17.69■□□□□ 0.42
COL11A1P12107 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.69■□□□□ 0.42
COL11A1P12107 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC17.69■□□□□ 0.42
COL11A1P12107 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.69■□□□□ 0.42
COL11A1P12107 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
COL11A1P12107 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL11A1P12107 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.69■□□□□ 0.42
COL11A1P12107 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.68■□□□□ 0.42
COL11A1P12107 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
COL11A1P12107 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
COL11A1P12107 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 AL139094.1-201ENST00000405549 1188 ntBASIC17.68■□□□□ 0.42
COL11A1P12107 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.68■□□□□ 0.42
COL11A1P12107 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.68■□□□□ 0.42
COL11A1P12107 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC17.68■□□□□ 0.42
COL11A1P12107 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.68■□□□□ 0.42
COL11A1P12107 AL008638.5-201ENST00000623814 1298 ntBASIC17.68■□□□□ 0.42
COL11A1P12107 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC17.68■□□□□ 0.42
COL11A1P12107 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
COL11A1P12107 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL11A1P12107 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.68■□□□□ 0.42
COL11A1P12107 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.68■□□□□ 0.42
COL11A1P12107 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
COL11A1P12107 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
COL11A1P12107 PCDHB19P-201ENST00000570871 2371 ntBASIC17.68■□□□□ 0.42
COL11A1P12107 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL11A1P12107 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms