Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
CXCL1P09341 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.42
CXCL1P09341 KRT8P44-201ENST00000441609 1350 ntBASIC12.4□□□□□ -0.42
CXCL1P09341 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CXCL1P09341 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC12.4□□□□□ -0.42
CXCL1P09341 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
CXCL1P09341 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
CXCL1P09341 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC12.4□□□□□ -0.43
CXCL1P09341 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
CXCL1P09341 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
CXCL1P09341 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 TERF1P1-201ENST00000311003 1181 ntBASIC12.39□□□□□ -0.43
CXCL1P09341 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
CXCL1P09341 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 AL020989.1-201ENST00000422979 469 ntBASIC12.39□□□□□ -0.43
CXCL1P09341 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 SPDYE13P-201ENST00000445314 798 ntBASIC12.39□□□□□ -0.43
CXCL1P09341 AC092647.4-201ENST00000457211 535 ntBASIC12.39□□□□□ -0.43
CXCL1P09341 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC12.39□□□□□ -0.43
CXCL1P09341 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC12.39□□□□□ -0.43
CXCL1P09341 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 IGHV3-41-201ENST00000613121 348 ntBASIC12.39□□□□□ -0.43
CXCL1P09341 TMEM191A-211ENST00000637163 1067 ntBASIC12.39□□□□□ -0.43
CXCL1P09341 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 PMPCAP1-201ENST00000508114 1576 ntBASIC12.39□□□□□ -0.43
CXCL1P09341 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC12.39□□□□□ -0.43
CXCL1P09341 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
CXCL1P09341 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CXCL1P09341 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
CXCL1P09341 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
CXCL1P09341 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC12.38□□□□□ -0.43
CXCL1P09341 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.38□□□□□ -0.43
CXCL1P09341 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC12.38□□□□□ -0.43
CXCL1P09341 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC12.38□□□□□ -0.43
CXCL1P09341 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
CXCL1P09341 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CXCL1P09341 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC12.38□□□□□ -0.43
CXCL1P09341 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC12.38□□□□□ -0.43
CXCL1P09341 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC12.38□□□□□ -0.43
CXCL1P09341 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC12.38□□□□□ -0.43
CXCL1P09341 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC12.38□□□□□ -0.43
CXCL1P09341 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC12.38□□□□□ -0.43
CXCL1P09341 AC083849.1-201ENST00000615227 514 ntBASIC12.38□□□□□ -0.43
CXCL1P09341 DFFB-212ENST00000625756 649 ntTSL 5 BASIC12.38□□□□□ -0.43
CXCL1P09341 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms