Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.04■□□□□ 0.64
COL4A1P02462 CYGB-203ENST00000589145 788 ntTSL 3 BASIC19.04■□□□□ 0.64
COL4A1P02462 BX539320.1-201ENST00000623759 877 ntBASIC19.04■□□□□ 0.64
COL4A1P02462 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC19.04■□□□□ 0.64
COL4A1P02462 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.04■□□□□ 0.64
COL4A1P02462 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A1P02462 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A1P02462 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A1P02462 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A1P02462 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
COL4A1P02462 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
COL4A1P02462 AL139384.1-201ENST00000612143 3047 ntBASIC19.04■□□□□ 0.64
COL4A1P02462 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.04■□□□□ 0.64
COL4A1P02462 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL4A1P02462 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC19.03■□□□□ 0.64
COL4A1P02462 AC084364.1-201ENST00000551967 1556 ntBASIC19.03■□□□□ 0.64
COL4A1P02462 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL4A1P02462 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
COL4A1P02462 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 AL158070.2-201ENST00000623713 1621 ntBASIC19.03■□□□□ 0.64
COL4A1P02462 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC19.03■□□□□ 0.64
COL4A1P02462 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC19.03■□□□□ 0.64
COL4A1P02462 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.03■□□□□ 0.64
COL4A1P02462 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL4A1P02462 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC19.03■□□□□ 0.64
COL4A1P02462 IGHJ2P-201ENST00000454480 60 ntBASIC19.03■□□□□ 0.64
COL4A1P02462 KRT18P25-201ENST00000508931 1278 ntBASIC19.03■□□□□ 0.64
COL4A1P02462 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC19.03■□□□□ 0.64
COL4A1P02462 AC091271.1-201ENST00000611877 1162 ntBASIC19.03■□□□□ 0.64
COL4A1P02462 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 PRSS30P-206ENST00000641773 873 ntBASIC19.03■□□□□ 0.64
COL4A1P02462 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
COL4A1P02462 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL4A1P02462 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.03■□□□□ 0.64
COL4A1P02462 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A1P02462 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A1P02462 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A1P02462 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A1P02462 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A1P02462 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC19.02■□□□□ 0.64
COL4A1P02462 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A1P02462 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A1P02462 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
COL4A1P02462 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC19.02■□□□□ 0.64
COL4A1P02462 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
COL4A1P02462 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC19.02■□□□□ 0.64
COL4A1P02462 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A1P02462 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC19.02■□□□□ 0.64
COL4A1P02462 PFN1P12-201ENST00000455938 534 ntBASIC19.02■□□□□ 0.64
COL4A1P02462 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC19.02■□□□□ 0.64
COL4A1P02462 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC19.02■□□□□ 0.64
COL4A1P02462 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC19.02■□□□□ 0.64
COL4A1P02462 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC19.02■□□□□ 0.64
COL4A1P02462 AC084346.2-201ENST00000607097 949 ntBASIC19.02■□□□□ 0.64
COL4A1P02462 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC19.02■□□□□ 0.64
COL4A1P02462 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A1P02462 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
COL4A1P02462 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL4A1P02462 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL4A1P02462 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL4A1P02462 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
COL4A1P02462 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL4A1P02462 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL4A1P02462 AL023775.1-201ENST00000454907 1746 ntBASIC19.02■□□□□ 0.63
COL4A1P02462 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
COL4A1P02462 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC19.02■□□□□ 0.63
COL4A1P02462 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.02■□□□□ 0.63
COL4A1P02462 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL4A1P02462 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL4A1P02462 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC19.02■□□□□ 0.63
COL4A1P02462 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL4A1P02462 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC19.01■□□□□ 0.63
COL4A1P02462 AC004945.1-201ENST00000416738 983 ntBASIC19.01■□□□□ 0.63
COL4A1P02462 HIST2H2BC-201ENST00000498492 580 ntBASIC19.01■□□□□ 0.63
COL4A1P02462 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.01■□□□□ 0.63
COL4A1P02462 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC19.01■□□□□ 0.63
COL4A1P02462 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC19.01■□□□□ 0.63
COL4A1P02462 AC068587.10-201ENST00000641210 219 ntBASIC19.01■□□□□ 0.63
COL4A1P02462 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.01■□□□□ 0.63
COL4A1P02462 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms