Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.35■□□□□ 0.05
SLC28A1O00337 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
SLC28A1O00337 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
SLC28A1O00337 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.35■□□□□ 0.05
SLC28A1O00337 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
SLC28A1O00337 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
SLC28A1O00337 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.35■□□□□ 0.05
SLC28A1O00337 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
SLC28A1O00337 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 MIR346-201ENST00000362234 95 ntBASIC15.35■□□□□ 0.05
SLC28A1O00337 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
SLC28A1O00337 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 AL139010.1-201ENST00000454878 894 ntBASIC15.35■□□□□ 0.05
SLC28A1O00337 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.35■□□□□ 0.05
SLC28A1O00337 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.35■□□□□ 0.05
SLC28A1O00337 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.35■□□□□ 0.05
SLC28A1O00337 AL450472.2-201ENST00000603663 1156 ntBASIC15.35■□□□□ 0.05
SLC28A1O00337 AC026120.1-201ENST00000611536 926 ntBASIC15.35■□□□□ 0.05
SLC28A1O00337 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.35■□□□□ 0.05
SLC28A1O00337 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.35■□□□□ 0.05
SLC28A1O00337 AC092902.6-201ENST00000641783 218 ntBASIC15.35■□□□□ 0.05
SLC28A1O00337 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.35■□□□□ 0.05
SLC28A1O00337 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
SLC28A1O00337 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.35■□□□□ 0.05
SLC28A1O00337 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.35■□□□□ 0.05
SLC28A1O00337 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SLC28A1O00337 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.34■□□□□ 0.05
SLC28A1O00337 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.34■□□□□ 0.05
SLC28A1O00337 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.34■□□□□ 0.05
SLC28A1O00337 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.34■□□□□ 0.05
SLC28A1O00337 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
SLC28A1O00337 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.34■□□□□ 0.05
SLC28A1O00337 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.34■□□□□ 0.05
SLC28A1O00337 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
SLC28A1O00337 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 IGHV3-62-201ENST00000520057 340 ntBASIC15.34■□□□□ 0.05
SLC28A1O00337 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 KRT8P23-201ENST00000560090 1207 ntBASIC15.34■□□□□ 0.05
SLC28A1O00337 AC243562.1-201ENST00000560672 389 ntBASIC15.34■□□□□ 0.05
SLC28A1O00337 AP000842.3-202ENST00000569238 1080 ntBASIC15.34■□□□□ 0.05
SLC28A1O00337 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 AC026979.3-201ENST00000607315 403 ntBASIC15.34■□□□□ 0.05
SLC28A1O00337 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
SLC28A1O00337 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
SLC28A1O00337 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 KRT8P37-201ENST00000451609 1420 ntBASIC15.34■□□□□ 0.05
SLC28A1O00337 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
SLC28A1O00337 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SLC28A1O00337 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
SLC28A1O00337 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
SLC28A1O00337 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
SLC28A1O00337 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SLC28A1O00337 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.33■□□□□ 0.05
SLC28A1O00337 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
SLC28A1O00337 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SLC28A1O00337 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
SLC28A1O00337 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.33■□□□□ 0.05
SLC28A1O00337 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SLC28A1O00337 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SLC28A1O00337 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SLC28A1O00337 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SLC28A1O00337 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms