Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.52■□□□□ 0.24
AP4E1Q9UPM8 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.52■□□□□ 0.24
AP4E1Q9UPM8 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.52■□□□□ 0.24
AP4E1Q9UPM8 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.52■□□□□ 0.24
AP4E1Q9UPM8 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.52■□□□□ 0.24
AP4E1Q9UPM8 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
AP4E1Q9UPM8 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.52■□□□□ 0.24
AP4E1Q9UPM8 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
AP4E1Q9UPM8 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.52■□□□□ 0.24
AP4E1Q9UPM8 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.52■□□□□ 0.23
AP4E1Q9UPM8 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
AP4E1Q9UPM8 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
AP4E1Q9UPM8 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
AP4E1Q9UPM8 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.52■□□□□ 0.23
AP4E1Q9UPM8 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
AP4E1Q9UPM8 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
AP4E1Q9UPM8 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
AP4E1Q9UPM8 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
AP4E1Q9UPM8 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.52■□□□□ 0.23
AP4E1Q9UPM8 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.52■□□□□ 0.23
AP4E1Q9UPM8 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 NFIC-211ENST00000641145 8399 ntBASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 AC092127.1-201ENST00000567093 3455 ntBASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 AL080243.2-201ENST00000418783 582 ntBASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 HIST3H2BA-201ENST00000436555 524 ntBASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 AC015911.4-201ENST00000588022 1070 ntBASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.51■□□□□ 0.23
AP4E1Q9UPM8 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 KRT18P28-201ENST00000453838 1332 ntBASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 FO393414.2-201ENST00000405153 598 ntBASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 KLF2P3-201ENST00000451977 1087 ntBASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 SPDYE12P-201ENST00000618416 771 ntBASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 LINC00554-201ENST00000564841 3011 ntBASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms