Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CISHQ9NSE2 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.94■□□□□ 0.3
CISHQ9NSE2 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 AL139384.1-201ENST00000612143 3047 ntBASIC16.94■□□□□ 0.3
CISHQ9NSE2 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 AC105917.1-201ENST00000506637 2539 ntBASIC16.94■□□□□ 0.3
CISHQ9NSE2 AC092127.1-201ENST00000567093 3455 ntBASIC16.94■□□□□ 0.3
CISHQ9NSE2 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.94■□□□□ 0.3
CISHQ9NSE2 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.94■□□□□ 0.3
CISHQ9NSE2 AC004890.2-204ENST00000481968 304 ntBASIC16.94■□□□□ 0.3
CISHQ9NSE2 AC093214.1-201ENST00000511688 1107 ntBASIC16.94■□□□□ 0.3
CISHQ9NSE2 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.94■□□□□ 0.3
CISHQ9NSE2 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.94■□□□□ 0.3
CISHQ9NSE2 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.94■□□□□ 0.3
CISHQ9NSE2 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CISHQ9NSE2 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.94■□□□□ 0.3
CISHQ9NSE2 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.94■□□□□ 0.3
CISHQ9NSE2 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.94■□□□□ 0.3
CISHQ9NSE2 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CISHQ9NSE2 AC092850.2-201ENST00000623821 2697 ntBASIC16.93■□□□□ 0.3
CISHQ9NSE2 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 Z97205.2-201ENST00000564697 1639 ntBASIC16.93■□□□□ 0.3
CISHQ9NSE2 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 BASP1P1-201ENST00000430708 665 ntBASIC16.93■□□□□ 0.3
CISHQ9NSE2 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 AC009477.1-201ENST00000452936 217 ntBASIC16.93■□□□□ 0.3
CISHQ9NSE2 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 ZNF890P-202ENST00000530367 1156 ntBASIC16.93■□□□□ 0.3
CISHQ9NSE2 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.93■□□□□ 0.3
CISHQ9NSE2 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.93■□□□□ 0.3
CISHQ9NSE2 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CISHQ9NSE2 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.93■□□□□ 0.3
CISHQ9NSE2 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CISHQ9NSE2 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CISHQ9NSE2 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CISHQ9NSE2 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CISHQ9NSE2 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CISHQ9NSE2 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CISHQ9NSE2 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms