Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 AL645939.2-201ENST00000427340 991 ntBASIC17.02■□□□□ 0.32
SIX2Q9NPC8 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 HLA-J-203ENST00000494367 1087 ntBASIC17.02■□□□□ 0.32
SIX2Q9NPC8 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 AL596442.2-201ENST00000610240 980 ntBASIC17.02■□□□□ 0.32
SIX2Q9NPC8 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SIX2Q9NPC8 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.02■□□□□ 0.31
SIX2Q9NPC8 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC17.02■□□□□ 0.31
SIX2Q9NPC8 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SIX2Q9NPC8 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SIX2Q9NPC8 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
SIX2Q9NPC8 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SIX2Q9NPC8 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
SIX2Q9NPC8 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SIX2Q9NPC8 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SIX2Q9NPC8 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SIX2Q9NPC8 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SIX2Q9NPC8 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 DNAJB3-202ENST00000449667 1266 ntBASIC17.01■□□□□ 0.31
SIX2Q9NPC8 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.01■□□□□ 0.31
SIX2Q9NPC8 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 AC069262.1-201ENST00000539058 672 ntBASIC17.01■□□□□ 0.31
SIX2Q9NPC8 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC17.01■□□□□ 0.31
SIX2Q9NPC8 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17■□□□□ 0.31
SIX2Q9NPC8 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms