Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.37□□□□□ -0.11
USB1Q9BQ65 AL096865.1-201ENST00000606796 927 ntBASIC14.37□□□□□ -0.11
USB1Q9BQ65 AC006387.1-201ENST00000626365 671 ntTSL 5 BASIC14.37□□□□□ -0.11
USB1Q9BQ65 RNF216P1-203ENST00000404404 2427 ntBASIC14.37□□□□□ -0.11
USB1Q9BQ65 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
USB1Q9BQ65 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USB1Q9BQ65 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.37□□□□□ -0.11
USB1Q9BQ65 AP3S2-216ENST00000617003 1561 ntBASIC14.37□□□□□ -0.11
USB1Q9BQ65 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USB1Q9BQ65 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.37□□□□□ -0.11
USB1Q9BQ65 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USB1Q9BQ65 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USB1Q9BQ65 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USB1Q9BQ65 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.37□□□□□ -0.11
USB1Q9BQ65 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.37□□□□□ -0.11
USB1Q9BQ65 GPAA1P2-202ENST00000606848 1787 ntBASIC14.37□□□□□ -0.11
USB1Q9BQ65 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
USB1Q9BQ65 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USB1Q9BQ65 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.36□□□□□ -0.11
USB1Q9BQ65 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 LINC01144-201ENST00000626198 1710 ntBASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC092171.3-201ENST00000610122 2651 ntBASIC14.36□□□□□ -0.11
USB1Q9BQ65 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC055876.3-201ENST00000431496 288 ntBASIC14.36□□□□□ -0.11
USB1Q9BQ65 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC092364.2-202ENST00000597012 1073 ntBASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC026979.3-201ENST00000607315 403 ntBASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC138649.4-201ENST00000612222 287 ntBASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.36□□□□□ -0.11
USB1Q9BQ65 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USB1Q9BQ65 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USB1Q9BQ65 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.35□□□□□ -0.11
USB1Q9BQ65 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.35□□□□□ -0.11
USB1Q9BQ65 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USB1Q9BQ65 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
USB1Q9BQ65 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USB1Q9BQ65 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USB1Q9BQ65 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USB1Q9BQ65 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USB1Q9BQ65 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.35□□□□□ -0.11
USB1Q9BQ65 AC008677.1-201ENST00000519230 1561 ntBASIC14.35□□□□□ -0.11
USB1Q9BQ65 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC14.35□□□□□ -0.11
USB1Q9BQ65 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USB1Q9BQ65 AC104640.1-201ENST00000562617 2109 ntBASIC14.35□□□□□ -0.11
USB1Q9BQ65 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USB1Q9BQ65 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
USB1Q9BQ65 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USB1Q9BQ65 AL671710.1-201ENST00000610245 2349 ntBASIC14.35□□□□□ -0.11
USB1Q9BQ65 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC14.35□□□□□ -0.11
USB1Q9BQ65 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.35□□□□□ -0.11
USB1Q9BQ65 AP000568.1-201ENST00000282964 442 ntBASIC14.35□□□□□ -0.11
USB1Q9BQ65 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms