Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 HNRNPA3P1-201ENST00000401429 1139 ntBASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 HNRNPA3P5-201ENST00000455201 833 ntBASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 MIR3197-201ENST00000582241 73 ntBASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 RN7SL828P-201ENST00000607615 303 ntBASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 AC073592.8-201ENST00000624126 511 ntBASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 AC100757.3-201ENST00000622361 1406 ntBASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 FAM220BP-201ENST00000377689 816 ntBASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 AL353705.2-201ENST00000428243 662 ntBASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 TSPY16P-201ENST00000449843 468 ntBASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 AL589739.1-201ENST00000607720 493 ntBASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CHMP4CQ96CF2 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.02■□□□□ 0.63
CHMP4CQ96CF2 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC19.02■□□□□ 0.63
CHMP4CQ96CF2 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CHMP4CQ96CF2 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.02■□□□□ 0.63
CHMP4CQ96CF2 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CHMP4CQ96CF2 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC19.02■□□□□ 0.63
CHMP4CQ96CF2 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.63
CHMP4CQ96CF2 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 RPL37AP1-201ENST00000412502 279 ntBASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 AL590560.3-201ENST00000623350 461 ntBASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 TDG-209ENST00000544861 1387 ntTSL 2 BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 SUPT20HL2-201ENST00000486479 2409 ntBASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHMP4CQ96CF2 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHMP4CQ96CF2 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC19■□□□□ 0.63
CHMP4CQ96CF2 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms