Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 AC067930.6-201ENST00000623257 4947 ntBASIC15.37■□□□□ 0.05
HMGCS1Q01581 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 FAM220BP-201ENST00000377689 816 ntBASIC15.37■□□□□ 0.05
HMGCS1Q01581 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 IGHV3-62-201ENST00000520057 340 ntBASIC15.37■□□□□ 0.05
HMGCS1Q01581 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGCS1Q01581 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGCS1Q01581 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.36■□□□□ 0.05
HMGCS1Q01581 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 AC138035.3-201ENST00000622706 2791 ntBASIC15.36■□□□□ 0.05
HMGCS1Q01581 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.36■□□□□ 0.05
HMGCS1Q01581 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 RPS8P6-201ENST00000426177 609 ntBASIC15.36■□□□□ 0.05
HMGCS1Q01581 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 ALG1L5P-201ENST00000482043 771 ntBASIC15.36■□□□□ 0.05
HMGCS1Q01581 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 C20orf181-201ENST00000623918 480 ntBASIC15.36■□□□□ 0.05
HMGCS1Q01581 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 UXT-AS1-201ENST00000590504 1525 ntBASIC15.36■□□□□ 0.05
HMGCS1Q01581 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
HMGCS1Q01581 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HMGCS1Q01581 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms