Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RNF4P78317 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
RNF4P78317 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.74□□□□□ -0.05
RNF4P78317 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.74□□□□□ -0.05
RNF4P78317 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
RNF4P78317 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.74□□□□□ -0.05
RNF4P78317 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
RNF4P78317 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.74□□□□□ -0.05
RNF4P78317 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.74□□□□□ -0.05
RNF4P78317 AC112504.1-201ENST00000623415 1841 ntBASIC14.74□□□□□ -0.05
RNF4P78317 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
RNF4P78317 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.74□□□□□ -0.05
RNF4P78317 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.74□□□□□ -0.05
RNF4P78317 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.74□□□□□ -0.05
RNF4P78317 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.74□□□□□ -0.05
RNF4P78317 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.74□□□□□ -0.05
RNF4P78317 AC114501.2-201ENST00000439631 535 ntBASIC14.74□□□□□ -0.05
RNF4P78317 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.74□□□□□ -0.05
RNF4P78317 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.74□□□□□ -0.05
RNF4P78317 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.74□□□□□ -0.05
RNF4P78317 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.74□□□□□ -0.05
RNF4P78317 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.74□□□□□ -0.05
RNF4P78317 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
RNF4P78317 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.74□□□□□ -0.05
RNF4P78317 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.74□□□□□ -0.05
RNF4P78317 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
RNF4P78317 AC008761.3-201ENST00000624803 892 ntBASIC14.74□□□□□ -0.05
RNF4P78317 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.74□□□□□ -0.05
RNF4P78317 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.74□□□□□ -0.05
RNF4P78317 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 DOC2GP-204ENST00000639052 2548 ntBASIC14.74□□□□□ -0.05
RNF4P78317 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
RNF4P78317 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.74□□□□□ -0.05
RNF4P78317 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.74□□□□□ -0.05
RNF4P78317 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.74□□□□□ -0.05
RNF4P78317 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.74□□□□□ -0.05
RNF4P78317 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
RNF4P78317 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.74□□□□□ -0.05
RNF4P78317 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
RNF4P78317 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RNF4P78317 Z97205.2-201ENST00000564697 1639 ntBASIC14.74□□□□□ -0.05
RNF4P78317 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.74□□□□□ -0.05
RNF4P78317 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 AC018892.3-201ENST00000623986 2499 ntBASIC14.73□□□□□ -0.05
RNF4P78317 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.73□□□□□ -0.05
RNF4P78317 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.73□□□□□ -0.05
RNF4P78317 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.73□□□□□ -0.05
RNF4P78317 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
RNF4P78317 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.73□□□□□ -0.05
RNF4P78317 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.73□□□□□ -0.05
RNF4P78317 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.73□□□□□ -0.05
RNF4P78317 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.73□□□□□ -0.05
RNF4P78317 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.73□□□□□ -0.05
RNF4P78317 SERBP1P5-201ENST00000510079 1181 ntBASIC14.73□□□□□ -0.05
RNF4P78317 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.73□□□□□ -0.05
RNF4P78317 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.73□□□□□ -0.05
RNF4P78317 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.73□□□□□ -0.05
RNF4P78317 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.73□□□□□ -0.05
RNF4P78317 AC004461.2-201ENST00000629517 803 ntBASIC14.73□□□□□ -0.05
RNF4P78317 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
RNF4P78317 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.73□□□□□ -0.05
RNF4P78317 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms