Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 AMT-204ENST00000427987 1646 ntTSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
FOXA3P55318 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 AC107918.4-201ENST00000641966 3141 ntBASIC12.04□□□□□ -0.48
FOXA3P55318 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
FOXA3P55318 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.48
FOXA3P55318 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
FOXA3P55318 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC12.03□□□□□ -0.48
FOXA3P55318 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
FOXA3P55318 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 TERF1P1-201ENST00000311003 1181 ntBASIC12.03□□□□□ -0.48
FOXA3P55318 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 PMS2P1-201ENST00000431037 1228 ntBASIC12.03□□□□□ -0.48
FOXA3P55318 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC12.03□□□□□ -0.48
FOXA3P55318 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC12.03□□□□□ -0.48
FOXA3P55318 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 AC011498.5-201ENST00000592027 486 ntBASIC12.03□□□□□ -0.48
FOXA3P55318 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC12.03□□□□□ -0.48
FOXA3P55318 NDUFV2-AS1-203ENST00000608008 779 ntBASIC12.03□□□□□ -0.48
FOXA3P55318 TMEM191A-211ENST00000637163 1067 ntBASIC12.03□□□□□ -0.48
FOXA3P55318 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12.03□□□□□ -0.48
FOXA3P55318 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC12.03□□□□□ -0.48
FOXA3P55318 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC12.03□□□□□ -0.48
FOXA3P55318 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC12.03□□□□□ -0.48
FOXA3P55318 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 NCF1C-201ENST00000438382 1427 ntBASIC12.03□□□□□ -0.48
FOXA3P55318 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
FOXA3P55318 AGAP7P-201ENST00000582299 2062 ntBASIC12.02□□□□□ -0.48
FOXA3P55318 AGAP14-201ENST00000624701 2060 ntBASIC12.02□□□□□ -0.48
FOXA3P55318 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA3P55318 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.02□□□□□ -0.48
FOXA3P55318 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA3P55318 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA3P55318 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA3P55318 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA3P55318 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC12.02□□□□□ -0.48
FOXA3P55318 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC12.02□□□□□ -0.48
FOXA3P55318 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA3P55318 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC12.02□□□□□ -0.48
FOXA3P55318 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.48
FOXA3P55318 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA3P55318 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.48
FOXA3P55318 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA3P55318 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA3P55318 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA3P55318 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.48
FOXA3P55318 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC12.02□□□□□ -0.49
FOXA3P55318 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
FOXA3P55318 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.02□□□□□ -0.49
FOXA3P55318 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms