Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC13.1□□□□□ -0.31
CDX1P47902 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CDX1P47902 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.1□□□□□ -0.31
CDX1P47902 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CDX1P47902 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CDX1P47902 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CDX1P47902 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 FRMD8P1-201ENST00000440433 1524 ntBASIC13.09□□□□□ -0.31
CDX1P47902 AC012569.1-201ENST00000591191 1524 ntBASIC13.09□□□□□ -0.31
CDX1P47902 AC107918.4-201ENST00000641966 3141 ntBASIC13.09□□□□□ -0.31
CDX1P47902 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC13.09□□□□□ -0.31
CDX1P47902 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CDX1P47902 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CDX1P47902 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CDX1P47902 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CDX1P47902 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CDX1P47902 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
CDX1P47902 AC002056.1-201ENST00000395613 760 ntBASIC13.09□□□□□ -0.31
CDX1P47902 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
CDX1P47902 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC13.09□□□□□ -0.31
CDX1P47902 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC13.09□□□□□ -0.31
CDX1P47902 AC140658.5-201ENST00000438532 169 ntBASIC13.09□□□□□ -0.31
CDX1P47902 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 CEND1P1-201ENST00000451006 455 ntBASIC13.09□□□□□ -0.31
CDX1P47902 ALG1L5P-201ENST00000482043 771 ntBASIC13.09□□□□□ -0.31
CDX1P47902 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.09□□□□□ -0.31
CDX1P47902 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 CCND1-203ENST00000536559 553 ntTSL 3 BASIC13.09□□□□□ -0.31
CDX1P47902 AP002472.1-201ENST00000577490 586 ntBASIC13.09□□□□□ -0.31
CDX1P47902 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.09□□□□□ -0.31
CDX1P47902 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC13.09□□□□□ -0.31
CDX1P47902 AL078644.1-201ENST00000609881 752 ntBASIC13.09□□□□□ -0.31
CDX1P47902 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC13.09□□□□□ -0.31
CDX1P47902 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 AP001350.2-201ENST00000625104 1094 ntBASIC13.09□□□□□ -0.31
CDX1P47902 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC13.09□□□□□ -0.31
CDX1P47902 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 HARS-203ENST00000431330 1774 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.09□□□□□ -0.31
CDX1P47902 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.09□□□□□ -0.31
CDX1P47902 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CDX1P47902 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CDX1P47902 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.09□□□□□ -0.31
CDX1P47902 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CDX1P47902 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
CDX1P47902 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
CDX1P47902 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
CDX1P47902 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.31
CDX1P47902 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.08□□□□□ -0.31
CDX1P47902 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.31
CDX1P47902 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC13.08□□□□□ -0.32
CDX1P47902 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.08□□□□□ -0.32
CDX1P47902 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CDX1P47902 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms