Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.51■□□□□ 0.23
PTPN9P43378 AC074338.1-201ENST00000416825 156 ntBASIC16.51■□□□□ 0.23
PTPN9P43378 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN9P43378 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.51■□□□□ 0.23
PTPN9P43378 AL844908.2-201ENST00000609461 460 ntBASIC16.51■□□□□ 0.23
PTPN9P43378 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.51■□□□□ 0.23
PTPN9P43378 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PTPN9P43378 AL590560.3-201ENST00000623350 461 ntBASIC16.51■□□□□ 0.23
PTPN9P43378 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.51■□□□□ 0.23
PTPN9P43378 AC100757.3-201ENST00000622361 1406 ntBASIC16.51■□□□□ 0.23
PTPN9P43378 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN9P43378 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.51■□□□□ 0.23
PTPN9P43378 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PTPN9P43378 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
PTPN9P43378 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN9P43378 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PTPN9P43378 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 AC127383.1-201ENST00000444697 1800 ntBASIC16.5■□□□□ 0.23
PTPN9P43378 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN9P43378 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN9P43378 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.5■□□□□ 0.23
PTPN9P43378 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.5■□□□□ 0.23
PTPN9P43378 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.5■□□□□ 0.23
PTPN9P43378 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.5■□□□□ 0.23
PTPN9P43378 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN9P43378 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN9P43378 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN9P43378 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.5■□□□□ 0.23
PTPN9P43378 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.5■□□□□ 0.23
PTPN9P43378 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.5■□□□□ 0.23
PTPN9P43378 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.5■□□□□ 0.23
PTPN9P43378 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 AC090616.6-203ENST00000579186 1945 ntBASIC16.5■□□□□ 0.23
PTPN9P43378 AL513477.1-201ENST00000602865 2407 ntBASIC16.5■□□□□ 0.23
PTPN9P43378 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN9P43378 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.5■□□□□ 0.23
PTPN9P43378 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.5■□□□□ 0.23
PTPN9P43378 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN9P43378 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN9P43378 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PTPN9P43378 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PTPN9P43378 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.49■□□□□ 0.23
PTPN9P43378 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
PTPN9P43378 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
PTPN9P43378 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.49■□□□□ 0.23
PTPN9P43378 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PTPN9P43378 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PTPN9P43378 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PTPN9P43378 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.49■□□□□ 0.23
PTPN9P43378 TSSK5P-201ENST00000423978 907 ntBASIC16.49■□□□□ 0.23
PTPN9P43378 PMS2P2-201ENST00000425039 1128 ntBASIC16.49■□□□□ 0.23
PTPN9P43378 AC055876.3-201ENST00000431496 288 ntBASIC16.49■□□□□ 0.23
PTPN9P43378 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.49■□□□□ 0.23
PTPN9P43378 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.49■□□□□ 0.23
PTPN9P43378 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.49■□□□□ 0.23
PTPN9P43378 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.49■□□□□ 0.23
PTPN9P43378 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.49■□□□□ 0.23
PTPN9P43378 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN9P43378 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.49■□□□□ 0.23
PTPN9P43378 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.49■□□□□ 0.23
PTPN9P43378 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PTPN9P43378 AC138649.4-201ENST00000612222 287 ntBASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms