Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC20.49■□□□□ 0.87
COL18A1P39060 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC20.48■□□□□ 0.87
COL18A1P39060 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC20.48■□□□□ 0.87
COL18A1P39060 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC20.48■□□□□ 0.87
COL18A1P39060 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC20.48■□□□□ 0.87
COL18A1P39060 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL18A1P39060 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.48■□□□□ 0.87
COL18A1P39060 AC018695.7-201ENST00000624587 2492 ntBASIC20.48■□□□□ 0.87
COL18A1P39060 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL18A1P39060 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL18A1P39060 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL18A1P39060 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL18A1P39060 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL18A1P39060 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC20.48■□□□□ 0.87
COL18A1P39060 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL18A1P39060 AL136309.1-201ENST00000403917 691 ntBASIC20.48■□□□□ 0.87
COL18A1P39060 HLA-K-203ENST00000430151 1046 ntBASIC20.48■□□□□ 0.87
COL18A1P39060 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC20.48■□□□□ 0.87
COL18A1P39060 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC20.48■□□□□ 0.87
COL18A1P39060 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL18A1P39060 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL18A1P39060 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC20.48■□□□□ 0.87
COL18A1P39060 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC20.48■□□□□ 0.87
COL18A1P39060 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL18A1P39060 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL18A1P39060 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL18A1P39060 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL18A1P39060 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC20.47■□□□□ 0.87
COL18A1P39060 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL18A1P39060 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL18A1P39060 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL18A1P39060 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL18A1P39060 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
COL18A1P39060 NUP210P1-202ENST00000504322 710 ntBASIC20.47■□□□□ 0.87
COL18A1P39060 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC20.47■□□□□ 0.87
COL18A1P39060 DUX4L47-201ENST00000566374 394 ntBASIC20.47■□□□□ 0.87
COL18A1P39060 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL18A1P39060 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
COL18A1P39060 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC20.47■□□□□ 0.87
COL18A1P39060 AC026740.1-201ENST00000607068 791 ntBASIC20.47■□□□□ 0.87
COL18A1P39060 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COL18A1P39060 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC20.47■□□□□ 0.87
COL18A1P39060 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL18A1P39060 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC20.47■□□□□ 0.87
COL18A1P39060 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL18A1P39060 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL18A1P39060 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC20.47■□□□□ 0.87
COL18A1P39060 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL18A1P39060 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL18A1P39060 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
COL18A1P39060 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC20.46■□□□□ 0.87
COL18A1P39060 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC20.46■□□□□ 0.87
COL18A1P39060 RN7SL720P-201ENST00000488178 304 ntBASIC20.46■□□□□ 0.87
COL18A1P39060 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC20.46■□□□□ 0.87
COL18A1P39060 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC20.46■□□□□ 0.87
COL18A1P39060 SAMD11P1-201ENST00000571429 661 ntBASIC20.46■□□□□ 0.87
COL18A1P39060 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC20.46■□□□□ 0.87
COL18A1P39060 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC20.46■□□□□ 0.87
COL18A1P39060 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC20.46■□□□□ 0.87
COL18A1P39060 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
COL18A1P39060 CLUHP2-201ENST00000426660 1303 ntBASIC20.46■□□□□ 0.87
COL18A1P39060 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC20.46■□□□□ 0.87
COL18A1P39060 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC20.46■□□□□ 0.87
COL18A1P39060 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC20.46■□□□□ 0.87
COL18A1P39060 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC20.46■□□□□ 0.87
COL18A1P39060 PFN2-205ENST00000461868 613 ntTSL 2 BASIC20.46■□□□□ 0.87
COL18A1P39060 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC20.46■□□□□ 0.87
COL18A1P39060 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC20.46■□□□□ 0.87
COL18A1P39060 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC20.46■□□□□ 0.87
COL18A1P39060 RN7SL774P-201ENST00000577467 290 ntBASIC20.46■□□□□ 0.87
COL18A1P39060 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC20.46■□□□□ 0.87
COL18A1P39060 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC20.46■□□□□ 0.87
COL18A1P39060 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.46■□□□□ 0.87
COL18A1P39060 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 AC084364.1-201ENST00000551967 1556 ntBASIC20.46■□□□□ 0.87
COL18A1P39060 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC20.46■□□□□ 0.87
COL18A1P39060 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL18A1P39060 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.45■□□□□ 0.86
COL18A1P39060 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.45■□□□□ 0.86
COL18A1P39060 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC20.45■□□□□ 0.86
COL18A1P39060 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC20.45■□□□□ 0.86
COL18A1P39060 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms