Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.84■□□□□ 0.45
CIITAP33076 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.84■□□□□ 0.45
CIITAP33076 TP53TG3HP-202ENST00000569755 579 ntBASIC17.84■□□□□ 0.45
CIITAP33076 CHCHD2P3-201ENST00000603038 451 ntBASIC17.84■□□□□ 0.45
CIITAP33076 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.84■□□□□ 0.45
CIITAP33076 AL662799.1-202ENST00000614205 422 ntBASIC17.84■□□□□ 0.45
CIITAP33076 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC17.84■□□□□ 0.45
CIITAP33076 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CIITAP33076 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CIITAP33076 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CIITAP33076 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CIITAP33076 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
CIITAP33076 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC17.83■□□□□ 0.45
CIITAP33076 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CIITAP33076 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.83■□□□□ 0.45
CIITAP33076 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CIITAP33076 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.83■□□□□ 0.45
CIITAP33076 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CIITAP33076 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.83■□□□□ 0.44
CIITAP33076 AC087499.6-201ENST00000411576 835 ntBASIC17.83■□□□□ 0.44
CIITAP33076 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.83■□□□□ 0.44
CIITAP33076 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.83■□□□□ 0.44
CIITAP33076 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC17.83■□□□□ 0.44
CIITAP33076 AC000095.1-201ENST00000603208 874 ntBASIC17.83■□□□□ 0.44
CIITAP33076 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
CIITAP33076 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.83■□□□□ 0.44
CIITAP33076 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CIITAP33076 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CIITAP33076 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CIITAP33076 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.82■□□□□ 0.44
CIITAP33076 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CIITAP33076 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CIITAP33076 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.82■□□□□ 0.44
CIITAP33076 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CIITAP33076 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.82■□□□□ 0.44
CIITAP33076 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CIITAP33076 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.82■□□□□ 0.44
CIITAP33076 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CIITAP33076 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.82■□□□□ 0.44
CIITAP33076 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.82■□□□□ 0.44
CIITAP33076 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.82■□□□□ 0.44
CIITAP33076 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.82■□□□□ 0.44
CIITAP33076 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CIITAP33076 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 CLK3P2-201ENST00000427566 1453 ntBASIC17.82■□□□□ 0.44
CIITAP33076 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CIITAP33076 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CIITAP33076 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
CIITAP33076 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CIITAP33076 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CIITAP33076 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CIITAP33076 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms