Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 AL512361.1-201ENST00000554200 418 ntBASIC18.37■□□□□ 0.53
CTDNEP1O95476 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 AC051619.7-201ENST00000568314 623 ntBASIC18.37■□□□□ 0.53
CTDNEP1O95476 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 AL138828.2-201ENST00000615812 383 ntBASIC18.37■□□□□ 0.53
CTDNEP1O95476 KRT8P44-201ENST00000441609 1350 ntBASIC18.37■□□□□ 0.53
CTDNEP1O95476 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.37■□□□□ 0.53
CTDNEP1O95476 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTDNEP1O95476 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
CTDNEP1O95476 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDNEP1O95476 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CTDNEP1O95476 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDNEP1O95476 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDNEP1O95476 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDNEP1O95476 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC18.36■□□□□ 0.53
CTDNEP1O95476 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC18.36■□□□□ 0.53
CTDNEP1O95476 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CTDNEP1O95476 TEX28P1-201ENST00000613479 1221 ntBASIC18.36■□□□□ 0.53
CTDNEP1O95476 TEX28P2-201ENST00000617764 1221 ntBASIC18.36■□□□□ 0.53
CTDNEP1O95476 AC139530.3-201ENST00000620344 690 ntBASIC18.36■□□□□ 0.53
CTDNEP1O95476 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.36■□□□□ 0.53
CTDNEP1O95476 CETN4P-206ENST00000642099 2168 ntBASIC18.36■□□□□ 0.53
CTDNEP1O95476 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.36■□□□□ 0.53
CTDNEP1O95476 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDNEP1O95476 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDNEP1O95476 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CTDNEP1O95476 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDNEP1O95476 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDNEP1O95476 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CTDNEP1O95476 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDNEP1O95476 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CTDNEP1O95476 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDNEP1O95476 TUBB3P1-201ENST00000405796 1332 ntBASIC18.35■□□□□ 0.53
CTDNEP1O95476 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDNEP1O95476 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CTDNEP1O95476 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDNEP1O95476 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 AC025048.3-201ENST00000590609 569 ntBASIC18.35■□□□□ 0.53
CTDNEP1O95476 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.35■□□□□ 0.53
CTDNEP1O95476 AC005702.4-201ENST00000618393 416 ntBASIC18.35■□□□□ 0.53
CTDNEP1O95476 AC093028.1-201ENST00000622998 982 ntBASIC18.35■□□□□ 0.53
CTDNEP1O95476 AL033527.5-202ENST00000641632 1098 ntBASIC18.35■□□□□ 0.53
CTDNEP1O95476 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CTDNEP1O95476 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 193.4 ms