Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC19.68■□□□□ 0.74
CACNA1FO60840 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1FO60840 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1FO60840 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 KRT8P14-201ENST00000414254 1442 ntBASIC19.67■□□□□ 0.74
CACNA1FO60840 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1FO60840 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1FO60840 AC018665.1-201ENST00000622927 1362 ntBASIC19.67■□□□□ 0.74
CACNA1FO60840 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC19.67■□□□□ 0.74
CACNA1FO60840 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC19.67■□□□□ 0.74
CACNA1FO60840 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1FO60840 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1FO60840 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC19.67■□□□□ 0.74
CACNA1FO60840 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC19.67■□□□□ 0.74
CACNA1FO60840 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CACNA1FO60840 PRSS30P-206ENST00000641773 873 ntBASIC19.67■□□□□ 0.74
CACNA1FO60840 BID-213ENST00000615414 2236 ntTSL 5 BASIC19.67■□□□□ 0.74
CACNA1FO60840 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1FO60840 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CACNA1FO60840 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CACNA1FO60840 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CACNA1FO60840 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC19.67■□□□□ 0.74
CACNA1FO60840 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC19.67■□□□□ 0.74
CACNA1FO60840 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC19.66■□□□□ 0.74
CACNA1FO60840 AC005034.1-201ENST00000426657 489 ntBASIC19.66■□□□□ 0.74
CACNA1FO60840 AL355864.2-201ENST00000447420 863 ntBASIC19.66■□□□□ 0.74
CACNA1FO60840 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CACNA1FO60840 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC19.66■□□□□ 0.74
CACNA1FO60840 AL158070.2-201ENST00000623713 1621 ntBASIC19.66■□□□□ 0.74
CACNA1FO60840 AC126365.1-201ENST00000578585 1514 ntBASIC19.66■□□□□ 0.74
CACNA1FO60840 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CACNA1FO60840 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC19.66■□□□□ 0.74
CACNA1FO60840 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.66■□□□□ 0.74
CACNA1FO60840 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.66■□□□□ 0.74
CACNA1FO60840 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CACNA1FO60840 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC19.66■□□□□ 0.74
CACNA1FO60840 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC19.66■□□□□ 0.74
CACNA1FO60840 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CACNA1FO60840 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.66■□□□□ 0.74
CACNA1FO60840 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC19.66■□□□□ 0.74
CACNA1FO60840 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CACNA1FO60840 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC19.66■□□□□ 0.74
CACNA1FO60840 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC19.66■□□□□ 0.74
CACNA1FO60840 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CACNA1FO60840 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CACNA1FO60840 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
CACNA1FO60840 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CACNA1FO60840 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC19.65■□□□□ 0.74
CACNA1FO60840 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
CACNA1FO60840 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CACNA1FO60840 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC19.65■□□□□ 0.74
CACNA1FO60840 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 KSR1-207ENST00000578981 748 ntTSL 4 BASIC19.65■□□□□ 0.74
CACNA1FO60840 ATF5-205ENST00000600336 682 ntTSL 2 BASIC19.65■□□□□ 0.74
CACNA1FO60840 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.65■□□□□ 0.74
CACNA1FO60840 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
CACNA1FO60840 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC19.65■□□□□ 0.74
CACNA1FO60840 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC19.65■□□□□ 0.74
CACNA1FO60840 KRT8P44-201ENST00000441609 1350 ntBASIC19.65■□□□□ 0.74
CACNA1FO60840 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CACNA1FO60840 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CACNA1FO60840 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms