Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 AC004890.2-204ENST00000481968 304 ntBASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 MIR6069-201ENST00000620069 79 ntBASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 BNIP3P1-202ENST00000550043 1585 ntBASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 AJ011932.1-201ENST00000621707 465 ntBASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 AL033527.5-202ENST00000641632 1098 ntBASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 AC007326.2-201ENST00000624224 7579 ntBASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 KRT8P37-201ENST00000451609 1420 ntBASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 AL365209.1-201ENST00000624418 6473 ntBASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRIM39Q9HCM9 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 BCRP1-201ENST00000444246 691 ntBASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 EEF1DP4-201ENST00000446006 880 ntBASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
TRIM39Q9HCM9 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms