Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 AL162726.2-201ENST00000438986 1017 ntBASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 MIR5189-201ENST00000577370 114 ntBASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 MIR6775-201ENST00000617557 69 ntBASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 AC018665.1-201ENST00000622927 1362 ntBASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.87■□□□□ 0.29
PAAF1Q9BRP4 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 AC099398.1-201ENST00000567919 2776 ntBASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 AC134915.1-201ENST00000426461 574 ntBASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 AC015936.2-201ENST00000593177 259 ntBASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 BTNL10-201ENST00000595971 695 ntBASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 MIR6805-201ENST00000615055 62 ntBASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 MSTO2P-201ENST00000314835 1709 ntBASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 AC020916.1-201ENST00000587762 1774 ntBASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 PCDHB19P-201ENST00000570871 2371 ntBASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
PAAF1Q9BRP4 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms