Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PTCHD1Q96NR3 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PTCHD1Q96NR3 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.05■□□□□ 0
PTCHD1Q96NR3 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.05■□□□□ 0
PTCHD1Q96NR3 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ 0
PTCHD1Q96NR3 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
PTCHD1Q96NR3 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
PTCHD1Q96NR3 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
PTCHD1Q96NR3 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
PTCHD1Q96NR3 AC010491.1-201ENST00000563101 2797 ntBASIC15.05■□□□□ 0
PTCHD1Q96NR3 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
PTCHD1Q96NR3 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
PTCHD1Q96NR3 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 TSSK5P-201ENST00000423978 907 ntBASIC15.05■□□□□ -0
PTCHD1Q96NR3 RN7SL618P-201ENST00000477850 296 ntBASIC15.05■□□□□ -0
PTCHD1Q96NR3 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 MIR6069-201ENST00000620069 79 ntBASIC15.05■□□□□ -0
PTCHD1Q96NR3 AJ011932.1-201ENST00000621707 465 ntBASIC15.05■□□□□ -0
PTCHD1Q96NR3 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.05■□□□□ -0
PTCHD1Q96NR3 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 AC007950.2-201ENST00000615045 2347 ntBASIC15.05■□□□□ -0
PTCHD1Q96NR3 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
PTCHD1Q96NR3 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTCHD1Q96NR3 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 KRT8P37-201ENST00000451609 1420 ntBASIC15.04■□□□□ -0
PTCHD1Q96NR3 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 BCRP1-201ENST00000444246 691 ntBASIC15.04■□□□□ -0
PTCHD1Q96NR3 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 AC004890.2-204ENST00000481968 304 ntBASIC15.04■□□□□ -0
PTCHD1Q96NR3 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 AL033527.5-202ENST00000641632 1098 ntBASIC15.04■□□□□ -0
PTCHD1Q96NR3 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PTCHD1Q96NR3 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
PTCHD1Q96NR3 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms