Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC12□□□□□ -0.49
LINC00477Q96M19 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC12□□□□□ -0.49
LINC00477Q96M19 MAL2-202ENST00000531508 892 ntTSL 3 BASIC12□□□□□ -0.49
LINC00477Q96M19 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC12□□□□□ -0.49
LINC00477Q96M19 AC145285.3-201ENST00000564603 959 ntBASIC12□□□□□ -0.49
LINC00477Q96M19 AC068137.2-201ENST00000605408 478 ntBASIC12□□□□□ -0.49
LINC00477Q96M19 AC064836.3-201ENST00000607928 673 ntBASIC12□□□□□ -0.49
LINC00477Q96M19 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
LINC00477Q96M19 PPT1-215ENST00000641471 2368 ntBASIC12□□□□□ -0.49
LINC00477Q96M19 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 SBF1P1-201ENST00000444527 5631 ntBASIC12□□□□□ -0.49
LINC00477Q96M19 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC12□□□□□ -0.49
LINC00477Q96M19 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 AC013268.4-201ENST00000637413 2228 ntBASIC11.99□□□□□ -0.49
LINC00477Q96M19 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 BEX3-201ENST00000361298 921 ntTSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 MRPL3P1-201ENST00000400109 1033 ntBASIC11.99□□□□□ -0.49
LINC00477Q96M19 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 AC105233.2-201ENST00000523697 349 ntBASIC11.99□□□□□ -0.49
LINC00477Q96M19 AF228730.5-201ENST00000530288 346 ntBASIC11.99□□□□□ -0.49
LINC00477Q96M19 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 AC073389.1-201ENST00000595595 795 ntBASIC11.99□□□□□ -0.49
LINC00477Q96M19 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 SPTSSB-204ENST00000617024 1292 ntBASIC11.99□□□□□ -0.49
LINC00477Q96M19 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC11.99□□□□□ -0.49
LINC00477Q96M19 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC00477Q96M19 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 AC136621.1-201ENST00000624017 2304 ntBASIC11.98□□□□□ -0.49
LINC00477Q96M19 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 AC134407.2-201ENST00000625089 1978 ntBASIC11.98□□□□□ -0.49
LINC00477Q96M19 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms